myRT

myRT report for GCA_003121505.1_ASM312150v1

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Seq: QAJH01000001.1 Bacteroides faecis strain 8736 ConsensusfromContig1, whole genome shotgun sequence (34756 bp)
Overview 1 RT 1: 22641-25345 bp Neighborhood of RT #1 [22641, 25413] RVT-Retrons Virulence_RhuM Feature: gene Location: 22641-22775 bp Feature: gene Location: 22924-23139 bp Feature: gene Location: 23164-24021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23326-23851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23326-23851 bp Feature: gene Location: 24052-24933 bp Feature: gene Location: 25198-25413 bp Feature: domain Description: Virulence_RhuM Location: 25240-25345 bp Feature: domain Description: Virulence_RhuM Location: 25240-25345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Virulence_RhuM (pfam13310)

Seq: QAJH01000035.1 Bacteroides faecis strain 8736 ConsensusfromContig13, whole genome shotgun sequence (17436 bp)
Overview 1 RT 1: 4007-9311 bp Neighborhood of RT #1 [4007, 9311] DNA_processg_A RVT-Retrons Feature: gene Location: 4007-4933 bp Feature: domain Description: DNA_processg_A Location: 4211-4688 bp Feature: domain Description: DNA_processg_A Location: 42 11-4688 bp Feature: gene Location: 4969-5757 bp Feature: gene Location: 6071-7531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6272-6902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 72 -6902 bp Feature: gene Location: 7533-8453 bp Feature: gene Location: 8769-9311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_processg_A (pfam02481), RVT-Retrons

Seq: QAJH01000063.1 Bacteroides faecis strain 8736 ConsensusfromContig155, whole genome shotgun sequence (21484 bp)
Overview 1 RT 1: 1-2653 bp Neighborhood of RT #1 [1, 2653] RVT-DGRs Feature: gene Location: 1-207 bp Feature: gene Location: 305-1852 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 512-1256 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 512-1256 bp Feature: gene Location: 1854-2228 bp Feature: gene Location: 2411-2653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QAJH01000068.1 Bacteroides faecis strain 8736 ConsensusfromContig16, whole genome shotgun sequence (136089 bp)
Overview 1 RT 1: 49153-53922 bp Neighborhood of RT #1 [49153, 53951] INTN1_C_like RVT-GII Intron_maturas2 HNHc HTH_18 Feature: gene Location: 49153-49488 bp Feature: gene Location: 49651-50055 bp Feature: domain Description: INTN1_C_like Location: 49723-50032 bp Feature: domain Description: INTN1_C_like Location: 4 9723-50032 bp Feature: gene Location: 50470-51981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50512-51256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50512-51256 bp Feature: domain Description: Intron_maturas2 Location: 51337-51634 bp Feature: domain Description: Intron_maturas2 Location: 51337-51634 bp Feature: domain Description: HNHc Note: nucleases Location: 51808-51913 bp Feature: domain Description: HNHc Note: nucleases Location: 51808-51913 bp Feature: gene Location: 52541-52798 bp Feature: gene Location: 52812-53951 bp Feature: domain Description: HTH_18 Location: 53682-53922 bp Feature: domain Description: HTH_18 Location: 53682-53922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_18 (pfam12833)

Seq: QAJH01000322.1 Bacteroides faecis strain 8736 ConsensusfromContig5, whole genome shotgun sequence (158073 bp)
Overview 1 RT 1: 80151-90370 bp 2 RT 2: 129589-134102 bp Neighborhood of RT #1 [80151, 90381] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [129589, 134102] RVT-UG27 Feature: gene Location: 80151-81980 bp Feature: gene Location: 82043-82396 bp Feature: gene Location: 82387-83808 bp Feature: domain Description: DUF1566 Location: 82459-82603 bp Feature: domain Description: DUF15 66 Location: 8245 9-82603 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82792-83533 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82792-835 33 bp Feature: gene Location: 83821-84222 bp Feature: domain Description: Avd_like Location: 83860-84199 bp Feature: domain Description: Avd_like Location: 83860-84199 bp Feature: gene Location: 84352-90381 bp Feature: domain Description: DUF1566 Location: 90067-90370 bp Feature: domain Description: DUF15 66 Location: 90067-90370 bp Feature: gene Location: 129589-130020 bp Feature: gene Location: 130103-130333 bp Feature: gene Location: 130330-131598 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 130519-131155 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1305 19-13115 5 bp Feature: gene Location: 132482-133078 bp Feature: gene Location: 133113-134102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), RVT-UG27

Seq: QAJH01000366.1 Bacteroides faecis strain 8736 ConsensusfromContig9, whole genome shotgun sequence (91164 bp)
Overview 1 RT 1: 404-11692 bp Neighborhood of RT #1 [404, 11808] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 404-2590 bp Feature: gene Location: 2795-3928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3119-3665 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3119-36 6 5 bp Feature: gene Location: 3970-9843 bp Feature: domain Description: DUF4011 Location: 5134-5644 bp Feature: domain Description: DUF4011 Location: 5134-56 44 bp Feature: domain Description: DEXXQc_SF1 Location: 5983-6592 bp Feature: domain Description: DEXXQc_SF1 Location: 5983-6 592 bp Feature: domain Description: DEXXQc_SF1 Location: 7255-8170 bp Feature: domain Description: DEXXQc_SF1 Location: 7255-8170 bp Feature: domain Description: KOG1803 Location: 8305-8683 bp Feature: domain Description: KOG1803 Location: 8305-86 83 bp Feature: domain Description: MTES_1575 Location: 8842-9130 bp Feature: domain Description: MTES_1575 Location: 8842-9130 bp Feature: domain Description: DUF3320 Location: 9361-9481 bp Feature: domain Description: DUF3320 Location: 936 1-9481 bp Feature: gene Location: 10012-11808 bp Feature: domain Description: rpsA Location: 10081-11692 bp Feature: domain Description: rpsA Location: 10081-116 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)