myRT

myRT report for GCA_003121585.1_ASM312158v1

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Seq: QEOO01000023.1 Nocardioides sp. YIM ART13 s.ART13_Contig15, whole genome shotgun sequence (138384 bp)
Overview 1 RT 1: 88573-93228 bp Neighborhood of RT #1 [88573, 93233] DDE_Tnp_1 RVT-GII GIIM CspC Feature: gene Location: 88573-89061 bp Feature: domain Description: DDE_Tnp_1 Location: 88690-88894 bp Feature: domain Description: DDE_Tnp_1 Location: 88690-88894 bp Feature: gene Location: 89078-89392 bp Feature: gene Location: 89536-90666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89542-90154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89542-901 54 bp Feature: domain Description: GIIM Note: maturase Location: 90211-90445 bp Feature: domain Description: GIIM Note: maturase Location: 9021 1 -90445 bp Feature: gene Location: 91667-92407 bp Feature: gene Location: 93030-93233 bp Feature: domain Description: CspC Location: 93033-93228 bp Feature: domain Description: CspC Location: 93033-93228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), CspC (COG1278)

Seq: QEOO01000003.1 Nocardioides sp. YIM ART13 s.ART13_Contig27, whole genome shotgun sequence (78095 bp)
Overview 1 RT 1: 73070-77889 bp Neighborhood of RT #1 [73070, 77915] Tryp_SPc P_proprotein RVT_N RVT-GII GIIM DDE_3 HTH_32 HTH_32 Feature: gene Location: 73070-74212 bp Feature: domain Description: Tryp_SPc Location: 73202-73847 bp Feature: domain Description: Tryp_SPc Location: 732 02 -73847 bp Feature: domain Description: P_proprotein Location: 73976-74207 bp Feature: domain Description: P_proprotein Location: 73976-742 07 bp Feature: gene Location: 74240-74674 bp Feature: gene Location: 74497-76260 bp Feature: RT Description: RVT_N Location: 74545-74785 bp Feature: RT Description: RVT_N Location: 74545-74785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74842-75499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74842 -75499 bp Feature: domain Description: GIIM Note: maturase Location: 75559-75787 bp Feature: domain Description: GIIM Note: maturase Location: 75559-75787 bp Feature: gene Location: 76912-77562 bp Feature: domain Description: DDE_3 Location: 77158-77539 bp Feature: domain Description: DDE_3 Location: 77158-77539 bp Feature: gene Location: 77421-77915 bp Feature: domain Description: HTH_32 Location: 77433-77529 bp Feature: domain Description: HTH_32 Location: 77433-7752 9 bp Feature: domain Description: HTH_32 Location: 77640-77889 bp Feature: domain Description: HTH_32 Location: 77640-77889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tryp_SPc (smart00020), P_proprotein (pfam01483), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), HTH_32 (pfam13565)

Seq: QEOO01000027.1 Nocardioides sp. YIM ART13 s.ART13_Contig74, whole genome shotgun sequence (1162 bp)
Overview 1 RT 1: 232-1162 bp Neighborhood of RT #1 [232, 1161] RVT-GII Feature: gene Location: 232-1161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874-1162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII