myRT

myRT report for GCA_003121985.1_ASM312198v1

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Seq: QEWP01000012.1 Marinilabilia sp. WTE strain WTE16 Scaffold12, whole genome shotgun sequence (170263 bp)
Overview 1 RT 1: 159457-169998 bp Neighborhood of RT #1 [159457, 170006] RVT-GII dCache_1 CHASE1 PRK11091 PAS_9 PAS TMAO_torS PRK09256 Feature: gene Location: 159457-164007 bp Feature: gene Location: 164167-164397 bp Feature: gene Location: 164535-164912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164547-164808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 64547-1 64808 bp Feature: gene Location: 165514-169206 bp Feature: domain Description: dCache_1 Location: 165862-166186 bp Feature: domain Description: dCache_1 Location: 1 65862-1 661 86 bp Feature: domain Description: CHASE1 Location: 166312-166564 bp Feature: domain Description: CHASE1 Location: 1 6631 2-1 66564 bp Feature: domain Description: PRK11091 Location: 167329-167626 bp Feature: domain Description: PRK1 1 091 Location: 1 67329-1 67626 bp Feature: domain Description: PAS_9 Location: 167647-167971 bp Feature: domain Description: PAS_9 Location: 1 67647-1 67971 bp Feature: domain Description: PAS Location: 168010-168340 bp Feature: domain Description: PAS Location: 1 6801 0-1 68340 bp Feature: domain Description: TMAO_torS Location: 168340-169189 bp Feature: domain Description: TMAO_torS Location: 1 68340-1 691 89 bp Feature: gene Location: 169596-170006 bp Feature: domain Description: PRK09256 Location: 169629-169998 bp Feature: domain Description: PRK09256 Location: 1 69629-1 69998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, dCache_1 (pfam02743), CHASE1 (COG3614), PRK11091 (aerobic respiration control sensor protein ArcB; Provisional), PAS_9 (pfam13426), PAS (smart00091), TMAO_torS (TIGR02956), PRK09256 (aminoacyl-tRNA hydrolase)

Seq: QEWP01000031.1 Marinilabilia sp. WTE strain WTE16 Scaffold31, whole genome shotgun sequence (29677 bp)
Overview 1 RT 1: 5151-9219 bp 2 RT 2: 26474-29512 bp Neighborhood of RT #1 [5151, 9278] DUF1016_N YhcG_C RVT-GII Phage_int_SAM_4 INT_IntI_C Neighborhood of RT #2 [26474, 29512] RVT-GII Feature: gene Location: 5151-5315 bp Feature: gene Location: 5407-6417 bp Feature: domain Description: DUF1016_N Location: 5452-5857 bp Feature: domain Description: DUF1016_N Location: 5452 -5857 bp Feature: domain Description: YhcG_C Location: 5911-6361 bp Feature: domain Description: YhcG_C Location: 5911-6361 bp Feature: gene Location: 6611-7282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6617-6932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6617-6932 bp Feature: gene Location: 7545-7730 bp Feature: gene Location: 8457-9278 bp Feature: domain Description: Phage_int_SAM_4 Location: 8463-8688 bp Feature: domain Description: Phage_int_SAM_4 Location: 8463-8688 bp Feature: domain Description: INT_IntI_C Location: 8733-9219 bp Feature: domain Description: INT_IntI_C Location: 8733-92 19 bp Feature: gene Location: 26474-26647 bp Feature: gene Location: 26765-27553 bp Feature: gene Location: 27691-28902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27880-28552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7880-2 8552 bp Feature: gene Location: 29058-29225 bp Feature: gene Location: 29342-29512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, RVT-GII, Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193)

Seq: QEWP01000046.1 Marinilabilia sp. WTE strain WTE16 Scaffold46, whole genome shotgun sequence (2253 bp)
Overview 1 RT 1: 42-1919 bp Neighborhood of RT #1 [42, 2197] RVT_N RVT-GII GIIM Feature: gene Location: 42-275 bp Feature: gene Location: 620-2197 bp Feature: RT Description: RVT_N Location: 716-959 bp Feature: RT Description: RVT_N Location: 716-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-163 1 bp Feature: domain Description: GIIM Note: maturase Location: 1685-1919 bp Feature: domain Description: GIIM Note: maturase Location: 1685-1919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QEWP01000047.1 Marinilabilia sp. WTE strain WTE16 Scaffold47, whole genome shotgun sequence (2033 bp)
Overview 1 RT 1: 632-1739 bp Neighborhood of RT #1 [632, 1948] RVT-GII GIIM Feature: gene Location: 632-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-14 54 bp Feature: domain Description: GIIM Note: maturase Location: 1526-1739 bp Feature: domain Description: GIIM Note: maturase Location: 1526-1739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QEWP01000007.1 Marinilabilia sp. WTE strain WTE16 Scaffold7, whole genome shotgun sequence (277382 bp)
Overview 1 RT 1: 17525-23523 bp 2 RT 2: 49272-53361 bp 3 RT 3: 235509-244481 bp Neighborhood of RT #1 [17525, 23606] CxxCxxCC RhaT RVT-GII GIIM COG1453 Neighborhood of RT #2 [49272, 53387] DUF3987 DUF3987 RVT-GII GIIM HTH_17 Neighborhood of RT #3 [235509, 244481] OMP_RagA_SusC COG3292 COG3292 COG3292 COG3292 Y_Y_Y BaeS PRK11107 YesN RVT-GII GIIM Feature: gene Location: 17525-18010 bp Feature: domain Description: CxxCxxCC Location: 17669-17924 bp Feature: domain Description: CxxCxxCC Location: 17669-17924 bp Feature: gene Location: 18958-19839 bp Feature: domain Description: RhaT Location: 18976-19831 bp Feature: domain Description: RhaT Location: 18976-19831 bp Feature: gene Location: 20210-21505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20474-21137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20474-21137 bp Feature: domain Description: GIIM Note: maturase Location: 21215-21422 bp Feature: domain Description: GIIM Note: maturase Location: 21215 -21422 bp Feature: gene Location: 21522-21794 bp Feature: gene Location: 22617-23606 bp Feature: domain Description: COG1453 Location: 22746-23523 bp Feature: domain Description: COG145 3 Location: 22746-235 23 bp Feature: gene Location: 49272-49430 bp Feature: gene Location: 49785-51140 bp Feature: domain Description: DUF3987 Location: 49974-50196 bp Feature: domain Description: DUF3987 Location: 49974-5 0196 bp Feature: domain Description: DUF3987 Location: 50211-50916 bp Feature: domain Description: DUF3987 Location: 5 0211-5 0916 bp Feature: gene Location: 51346-52731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51694-52342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 1694-5 2342 bp Feature: domain Description: GIIM Note: maturase Location: 52417-52633 bp Feature: domain Description: GIIM Note: maturase Location: 5 2417-5 2633 bp Feature: gene Location: 52747-53034 bp Feature: gene Location: 53169-53387 bp Feature: domain Description: HTH_17 Location: 53295-53361 bp Feature: domain Description: HTH_17 Location: 5 3295 -5 3361 bp Feature: gene Location: 235509-238631 bp Feature: domain Description: OMP_RagA_SusC Location: 235635-238623 bp Feature: domain Description: OMP_RagA_SusC Location: 235 635 -238623 bp Feature: gene Location: 238865-242980 bp Feature: domain Description: COG3292 Location: 238943-239495 bp Feature: domain Description: COG3292 Location: 238943-239495 bp Feature: domain Description: COG3292 Location: 239558-239762 bp Feature: domain Description: COG3292 Location: 2395 5 8-239762 bp Feature: domain Description: COG3292 Location: 239921-240317 bp Feature: domain Description: COG3292 Location: 239921-240317 bp Feature: domain Description: COG3292 Location: 240503-240746 bp Feature: domain Description: COG3292 Location: 2405 03-240746 bp Feature: domain Description: Y_Y_Y Location: 241061-241250 bp Feature: domain Description: Y_Y_Y Location: 241061-24125 0 bp Feature: domain Description: BaeS Location: 241376-242108 bp Feature: domain Description: BaeS Location: 241376-242108 bp Feature: domain Description: PRK11107 Location: 242192-242600 bp Feature: domain Description: PRK11107 Location: 242192-242600 bp Feature: domain Description: YesN Location: 242729-242966 bp Feature: domain Description: YesN Location: 242729-242966 bp Feature: gene Location: 243079-243720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243091-243352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243091-24335 2 bp Feature: domain Description: GIIM Note: maturase Location: 243442-243637 bp Feature: domain Description: GIIM Note: maturase Location: 243442-243637 bp Feature: gene Location: 244074-244250 bp Feature: gene Location: 244308-244481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CxxCxxCC (pfam03692), RhaT (TIGR00776), RVT-GII, GIIM (pfam08388), COG1453 (Predicted oxidoreductase of the aldo/keto reductase family ), DUF3987 (pfam13148), HTH_17 (pfam12728), OMP_RagA_SusC (TIGR04056), COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495)
BaeS (COG0642), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), YesN (COG4753)