myRT

myRT report for GCA_003122965.2_ASM312296v2

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Seq: QBDE02000156.1 Escherichia coli strain 31707 NODE_156_length_2272_cov_37.2545, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QBDE02000061.1 Escherichia coli strain 31707 NODE_61_length_16026_cov_13.1503, whole genome shotgun sequence (16026 bp)
Overview 1 RT 1: 8895-12784 bp Neighborhood of RT #1 [8895, 12789] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 8895-9248 bp Feature: gene Location: 9607-9804 bp Feature: gene Location: 9973-10407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10165-10381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10165-10381 bp Feature: gene Location: 10380-11231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10383-10791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10383-10791 bp Feature: domain Description: GIIM Note: maturase Location: 10839-11064 bp Feature: domain Description: GIIM Note: maturase Location: 10839-11064 bp Feature: gene Location: 11409-11627 bp Feature: gene Location: 11758-12789 bp Feature: domain Description: LacI Location: 11800-11935 bp Feature: domain Description: LacI Location: 11800-11935 bp Feature: domain Description: PBP1_GntR Location: 11974-12784 bp Feature: domain Description: PBP1_GntR Location: 11974-12 784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: QBDE02000083.1 Escherichia coli strain 31707 NODE_83_length_9086_cov_23.1879, whole genome shotgun sequence (9086 bp)
Overview 1 RT 1: 4244-8036 bp Neighborhood of RT #1 [4244, 8036] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 4244-4513 bp Feature: gene Location: 4994-5134 bp Feature: gene Location: 5156-6880 bp Feature: RT Description: RVT_N Location: 5213-5450 bp Feature: RT Description: RVT_N Location: 5213 -5450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501-6149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501-6149 bp Feature: domain Description: YkfC Location: 6281-6437 bp Feature: domain Description: YkfC Location: 6281-643 7 bp Feature: domain Description: HNHc Note: nucleases Location: 6665-6824 bp Feature: domain Description: HNHc Note: nucleases Location: 6665-6824 bp Feature: gene Location: 6957-7859 bp Feature: domain Description: DUF1281 Location: 7026-7554 bp Feature: domain Description: DUF1281 Location: 7026-7554 bp Feature: domain Description: DUF1281_C Location: 7560-7800 bp Feature: domain Description: DUF1281_C Location: 7560-7800 bp Feature: gene Location: 7863-8036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: QBDE02000008.1 Escherichia coli strain 31707 NODE_8_length_150742_cov_19.7003, whole genome shotgun sequence (150742 bp)
Overview 1 RT 1: 297-6108 bp Neighborhood of RT #1 [297, 6152] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 COG3943 Feature: gene Location: 297-617 bp Feature: domain Description: DUF5375 Location: 300-615 bp Feature: domain Description: DUF5375 Location: 300-615 bp Feature: gene Location: 632-2965 bp Feature: domain Description: Prim_Zn_Ribbon Location: 722-830 bp Feature: domain Description: Prim_Zn_Ribbon Location: 722-830 bp Feature: domain Description: COG3378 Location: 1442-2954 bp Feature: domain Description: COG3378 Location: 14 4 2-2954 bp Feature: gene Location: 3552-5183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3867-4464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3867-4 4 64 bp Feature: domain Description: TIR_2 Location: 4788-5145 bp Feature: domain Description: TIR_2 Location: 4 788-514 5 bp Feature: gene Location: 5421-5573 bp Feature: domain Description: Pox_D5 Location: 5424-5547 bp Feature: domain Description: Pox_D5 Location: 54 24 -554 7 bp Feature: gene Location: 6006-6152 bp Feature: domain Description: COG3943 Location: 6009-6108 bp Feature: domain Description: COG394 3 Location: 6009-6108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3943 (Uncharacterized conserved protein ), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase )