myRT

myRT report for GCA_003123085.1_ASM312308v1

Download annotations/find similar RTs

Seq: QBCI01000178.1 Escherichia coli strain CB15046 CB15046_contig_178, whole genome shotgun sequence (3863 bp)
Overview 1 RT 1: 1-3793 bp Neighborhood of RT #1 [1, 3861] PHA02517 RVT-GII GIIM PHA02517 PRK14702 INT_P4_C Feature: gene Location: 1-150 bp Feature: domain Description: PHA02517 Location: 4-85 bp Feature: domain Description: PHA0251 7 Location: 4-85 bp Feature: gene Location: 742-2265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015-1747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 5-1 747 bp Feature: domain Description: GIIM Note: maturase Location: 1822-2020 bp Feature: domain Description: GIIM Note: maturase Location: 1 822-2020 bp Feature: gene Location: 2394-2717 bp Feature: domain Description: PHA02517 Location: 2397-2682 bp Feature: domain Description: PHA0251 7 Location: 2397-2682 bp Feature: gene Location: 2908-3861 bp Feature: domain Description: PRK14702 Location: 2911-3214 bp Feature: domain Description: PRK1 4702 Location: 291 1 -321 4 bp Feature: domain Description: INT_P4_C Location: 3217-3793 bp Feature: domain Description: INT_P4_C Location: 321 7-3793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PRK14702 (insertion element IS2 transposase InsD; Provisional), INT_P4_C (cd00801), RVT-GII, GIIM (pfam08388)

Seq: QBCI01000218.1 Escherichia coli strain CB15046 CB15046_contig_218, whole genome shotgun sequence (7761 bp)
Overview 1 RT 1: 122-2761 bp Neighborhood of RT #1 [122, 2761] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 122-1789 bp Feature: RT Description: RVT_N Location: 170-407 bp Feature: RT Description: RVT_N Location: 170-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1100 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1385 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1754 bp Feature: gene Location: 2069-2251 bp Feature: gene Location: 2513-2761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)