myRT

myRT report for GCA_003123945.1_ASM312394v1

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Seq: PYBH01000037.1 Klebsiella pneumoniae strain KPL0.2, whole genome shotgun sequence (17394 bp)
Overview 1 RT 1: 9129-13571 bp Neighborhood of RT #1 [9129, 13573] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 9129-10400 bp Feature: domain Description: umuC Location: 9132-10392 bp Feature: domain Description: umuC Location: 91 32-1 0392 bp Feature: gene Location: 10400-11083 bp Feature: domain Description: PRK10276 Location: 10703-11066 bp Feature: domain Description: PRK1 0276 Location: 1 0703-1 1 066 bp Feature: gene Location: 11237-12724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11642-12332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 642-1 2332 bp Feature: gene Location: 12876-13151 bp Feature: domain Description: InsA Location: 12879-13143 bp Feature: domain Description: InsA Location: 1 2879-1 31 43 bp Feature: gene Location: 13070-13573 bp Feature: domain Description: DDE_Tnp_IS1 Location: 13181-13571 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 31 81 -1 3571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: PYBH01000054.1 Klebsiella pneumoniae strain KPL0.2, whole genome shotgun sequence (2784 bp)
Overview 1 RT 1: 1-2783 bp Neighborhood of RT #1 [1, 2783] RVT-Retrons CspC Feature: gene Location: 1-189 bp Feature: gene Location: 823-1005 bp Feature: gene Location: 1027-2166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1171-1726 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1171-172 6 bp Feature: gene Location: 2171-2374 bp Feature: domain Description: CspC Location: 2174-2369 bp Feature: domain Description: CspC Location: 2 174-2 369 bp Feature: gene Location: 2583-2783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)

Seq: PYBH01000006.1 Klebsiella pneumoniae strain KPL0.2, whole genome shotgun sequence (270386 bp)
Overview 1 RT 1: 22909-27792 bp Neighborhood of RT #1 [22909, 27794] umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 22909-24174 bp Feature: domain Description: umuC Location: 22912-24172 bp Feature: domain Description: umuC Location: 22912-24172 bp Feature: gene Location: 24399-24587 bp Feature: gene Location: 24847-25755 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25120-25576 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25120-25576 bp Feature: gene Location: 25956-26624 bp Feature: domain Description: PRK09951 Location: 25959-26622 bp Feature: domain Description: PRK09951 Location: 25959-26622 bp Feature: gene Location: 26829-27794 bp Feature: domain Description: PRK15110 Location: 26832-27792 bp Feature: domain Description: PRK15110 Location: 2683 2-27792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)