myRT

myRT report for GCA_003131925.1_20120500_P32

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Seq: PKWC01000245.1 Alphaproteobacteria bacterium isolate palsa_914 73.20120500_P32.15_contig_15035, whole genome shotgun sequence (8323 bp)
Overview 1 RT 1: 2319-8315 bp Neighborhood of RT #1 [2319, 8320] holA CHAD RVT-GII PRK08279 Feature: gene Location: 2319-3344 bp Feature: domain Description: holA Location: 2322-3336 bp Feature: domain Description: holA Location: 2322-3336 bp Feature: gene Location: 3471-4640 bp Feature: domain Description: CHAD Location: 3753-4485 bp Feature: domain Description: CHAD Location: 3753-4485 bp Feature: gene Location: 4766-5866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4769-5378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4769-5378 bp Feature: gene Location: 5987-6526 bp Feature: gene Location: 7169-8320 bp Feature: domain Description: PRK08279 Location: 7289-8315 bp Feature: domain Description: PRK08279 Location: 7289-831 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT holA (TIGR01128), CHAD (smart00880), RVT-GII, PRK08279 (long-chain-acyl-CoA synthetase; Validated)

Seq: PKWC01000268.1 Alphaproteobacteria bacterium isolate palsa_914 73.20120500_P32.15_contig_1771, whole genome shotgun sequence (10579 bp)
Overview 1 RT 1: 3507-9664 bp Neighborhood of RT #1 [3507, 9717] STE14 STE14 RVT-UG7 pcrA purN Feature: gene Location: 3507-4166 bp Feature: domain Description: STE14 Location: 3684-3921 bp Feature: domain Description: STE14 Location: 3684-392 1 bp Feature: domain Description: STE14 Location: 3927-4161 bp Feature: domain Description: STE14 Location: 392 7-4161 bp Feature: gene Location: 4163-4783 bp Feature: gene Location: 4870-6474 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5269-5692 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 52 69-5692 bp Feature: gene Location: 6523-8844 bp Feature: domain Description: pcrA Location: 6613-8830 bp Feature: domain Description: pcrA Location: 6613-8830 bp Feature: gene Location: 9061-9717 bp Feature: domain Description: purN Location: 9079-9664 bp Feature: domain Description: purN Location: 9079-9664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STE14 (COG2020), RVT-UG7, pcrA (TIGR01073), purN (PRK05647)

Seq: PKWC01000080.1 Alphaproteobacteria bacterium isolate palsa_914 73.20120500_P32.15_contig_2220, whole genome shotgun sequence (17772 bp)
Overview 1 RT 1: 2155-5249 bp 2 RT 2: 8670-15501 bp Neighborhood of RT #1 [2155, 5249] AlpA PinE RVT-CRISPR-like Neighborhood of RT #2 [8670, 15521] STE14 SufI SufI RVT-GII CHASE PRK13557 CheY Feature: gene Location: 2155-2388 bp Feature: domain Description: AlpA Location: 2227-2377 bp Feature: domain Description: AlpA Location: 2227-23 77 bp Feature: gene Location: 2433-2870 bp Feature: domain Description: PinE Location: 2490-2637 bp Feature: domain Description: PinE Location: 2490-263 7 bp Feature: gene Location: 2867-4201 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3302-3761 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3 3 02-3 761 bp Feature: gene Location: 4217-4834 bp Feature: gene Location: 4929-5249 bp Feature: gene Location: 8670-9788 bp Feature: domain Description: STE14 Location: 8865-9213 bp Feature: domain Description: STE14 Location: 8865-9213 bp Feature: gene Location: 9900-11444 bp Feature: domain Description: SufI Location: 9912-10320 bp Feature: domain Description: SufI Location: 9912-103 20 bp Feature: domain Description: SufI Location: 10404-11439 bp Feature: domain Description: SufI Location: 10404-1143 9 bp Feature: gene Location: 11933-12217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11939-12068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193 9-12068 bp Feature: gene Location: 12242-14995 bp Feature: domain Description: CHASE Location: 12557-13055 bp Feature: domain Description: CHASE Location: 12557-13 055 bp Feature: domain Description: PRK13557 Location: 13415-14978 bp Feature: domain Description: PRK13 557 Location: 13 415-14978 bp Feature: gene Location: 15135-15521 bp Feature: domain Description: CheY Location: 15141-15501 bp Feature: domain Description: CheY Location: 15141-15501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), PinE (COG1961), RVT-CRISPR, STE14 (COG2020), SufI (COG2132), RVT-GII, CHASE (smart01079), PRK13557 (histidine kinase; Provisional), CheY (COG0784)