myRT

myRT report for GCA_003131995.1_20120500_P31

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Seq: PKWI01000343.1 Rhizobiales bacterium isolate palsa_912 73.20120500_P31.4_contig_2088, whole genome shotgun sequence (37782 bp)
Overview 1 RT 1: 3504-8154 bp Neighborhood of RT #1 [3504, 8154] YdfG bacter_Pnkp RVT-Retrons Feature: gene Location: 3504-4241 bp Feature: domain Description: YdfG Location: 3516-4236 bp Feature: domain Description: YdfG Location: 351 6-4236 bp Feature: gene Location: 4346-4933 bp Feature: domain Description: bacter_Pnkp Location: 4397-4895 bp Feature: domain Description: bacter_Pnkp Location: 4397-4895 bp Feature: gene Location: 5108-6070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5264-5819 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5264-581 9 bp Feature: gene Location: 6092-7417 bp Feature: gene Location: 7909-8154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdfG (COG4221), bacter_Pnkp (TIGR04075), RVT-Retrons

Seq: PKWI01000257.1 Rhizobiales bacterium isolate palsa_912 73.20120500_P31.4_contig_8459, whole genome shotgun sequence (6952 bp)
Overview 1 RT 1: 769-4614 bp Neighborhood of RT #1 [769, 4736] Tra5 RVT-GII GIIM HTH_32 HTH_Tnp_1 Feature: gene Location: 769-933 bp Feature: gene Location: 1189-1872 bp Feature: domain Description: Tra5 Location: 1222-1705 bp Feature: domain Description: Tra5 Location: 12 2 2 -1705 bp Feature: gene Location: 1876-3240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2218-2860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 18-2 860 bp Feature: domain Description: GIIM Note: maturase Location: 2932-3154 bp Feature: domain Description: GIIM Note: maturase Location: 2 932 -3154 bp Feature: gene Location: 3742-4233 bp Feature: domain Description: HTH_32 Location: 3859-4036 bp Feature: domain Description: HTH_32 Location: 3859-4036 bp Feature: gene Location: 4230-4736 bp Feature: domain Description: HTH_Tnp_1 Location: 4383-4614 bp Feature: domain Description: HTH_Tnp_1 Location: 4383-4614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), HTH_Tnp_1 (pfam01527)