myRT

myRT report for GCA_003132125.1_20120500_P28

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Seq: PKWT01000448.1 Micrococcales bacterium isolate palsa_659 73.20120500_P28.26_contig_15806, whole genome shotgun sequence (8606 bp)
Overview 1 RT 1: 2189-6612 bp Neighborhood of RT #1 [2189, 6830] GatA RVT-UG22 PRK10785 E_set_CDase_PDE_N AmyAc_CMD Feature: gene Location: 2189-2641 bp Feature: gene Location: 2786-4138 bp Feature: domain Description: GatA Location: 2807-4130 bp Feature: domain Description: GatA Location: 2807-41 30 bp Feature: gene Location: 4508-4822 bp Feature: RT Description: RVT-UG22 Note: UG22 RT Location: 4514-4802 bp Feature: RT Description: RVT-UG22 Note: UG22 RT Location: 451 4-4802 bp Feature: gene Location: 4978-5373 bp Feature: domain Description: PRK10785 Location: 4990-5263 bp Feature: domain Description: PRK1 0785 Location: 4990-5263 bp Feature: gene Location: 5370-6830 bp Feature: domain Description: E_set_CDase_PDE_N Location: 5394-5760 bp Feature: domain Description: E_set_CDase_PDE_N Location: 5394-5760 bp Feature: domain Description: AmyAc_CMD Location: 5799-6612 bp Feature: domain Description: AmyAc_CMD Location: 5799-661 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GatA (COG0154), RVT-UG22, PRK10785 (maltodextrin glucosidase; Provisional), E_set_CDase_PDE_N (cd02857), AmyAc_CMD (cd11338)

Seq: PKWT01000188.1 Micrococcales bacterium isolate palsa_659 73.20120500_P28.26_contig_1752, whole genome shotgun sequence (9752 bp)
Overview 1 RT 1: 2-6785 bp Neighborhood of RT #1 [2, 6817] DDE_5 RVT_N RVT-GII GIIM HNH DDE_Tnp_1 PRK13914 Feature: gene Location: 2-1129 bp Feature: domain Description: DDE_5 Location: 92-782 bp Feature: domain Description: DDE_5 Location: 92 -782 bp Feature: gene Location: 1765-3555 bp Feature: domain Description: RVT_N Location: 1837-2080 bp Feature: domain Description: RVT_N Location: 1837-2 080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2146-2812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 146-2 812 bp Feature: domain Description: GIIM Note: maturase Location: 2866-3100 bp Feature: domain Description: GIIM Note: maturase Location: 2 866-3100 bp Feature: domain Description: HNH Note: nucleases Location: 3418-3523 bp Feature: domain Description: HNH Note: nucleases Location: 3418-352 3 bp Feature: gene Location: 3802-4779 bp Feature: domain Description: DDE_Tnp_1 Location: 4009-4489 bp Feature: domain Description: DDE_Tnp_1 Location: 4009-4489 bp Feature: gene Location: 5513-6817 bp Feature: domain Description: PRK13914 Location: 6080-6785 bp Feature: domain Description: PRK13914 Location: 6080-6785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DDE_Tnp_1 (pfam01609), PRK13914 (invasion associated endopeptidase)

Seq: PKWT01000070.1 Micrococcales bacterium isolate palsa_659 73.20120500_P28.26_contig_2643, whole genome shotgun sequence (19017 bp)
Overview 1 RT 1: 14859-18981 bp Neighborhood of RT #1 [14859, 19016] Ap6A_hydrolase RVT_N RVT-GII Feature: gene Location: 14859-15245 bp Feature: domain Description: Ap6A_hydrolase Location: 14871-15162 bp Feature: domain Description: Ap6A_hydrolase Location: 14871-15162 bp Feature: gene Location: 15395-17554 bp Feature: gene Location: 18360-19016 bp Feature: domain Description: RVT_N Location: 18423-18660 bp Feature: domain Description: RVT_N Location: 18423 -18660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18720-18981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18720-18981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ap6A_hydrolase (cd03673), RVT_N (pfam13655), RVT-GII

Seq: PKWT01000152.1 Micrococcales bacterium isolate palsa_659 73.20120500_P28.26_contig_4664, whole genome shotgun sequence (23456 bp)
Overview 1 RT 1: 3-3475 bp Neighborhood of RT #1 [3, 3513] DDE_3 RVT-GII GIIM HTH_29 HTH_29 HTH_31 Feature: gene Location: 3-461 bp Feature: domain Description: DDE_3 Location: 12-378 bp Feature: domain Description: DDE_3 Location: 12-378 bp Feature: gene Location: 1116-2429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1431-2118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 31-2118 bp Feature: domain Description: GIIM Note: maturase Location: 2193-2418 bp Feature: domain Description: GIIM Note: maturase Location: 2193-24 18 bp Feature: gene Location: 2669-3205 bp Feature: domain Description: HTH_29 Location: 2771-2945 bp Feature: domain Description: HTH_29 Location: 2771-294 5 bp Feature: domain Description: HTH_29 Location: 3005-3062 bp Feature: domain Description: HTH_29 Location: 3005-3062 bp Feature: gene Location: 3271-3513 bp Feature: domain Description: HTH_31 Location: 3334-3475 bp Feature: domain Description: HTH_31 Location: 3334 -34 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HTH_31 (pfam13560)