myRT

myRT report for GCA_003132745.1_20120500_P16

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Seq: PKYT01000098.1 Acidobacteriaceae bacterium isolate palsa_271 73.20120500_P16.3_contig_2052, whole genome shotgun sequence (3744 bp)
Overview 1 RT 1: 2-3477 bp Neighborhood of RT #1 [2, 3477] RVT-GII mmdA Feature: gene Location: 2-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1 1 00 bp Feature: gene Location: 1546-3096 bp Feature: domain Description: mmdA Location: 1564-3094 bp Feature: domain Description: mmdA Location: 1 564-3094 bp Feature: gene Location: 3118-3477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, mmdA (TIGR01117)

Seq: PKYT01000091.1 Acidobacteriaceae bacterium isolate palsa_271 73.20120500_P16.3_contig_369, whole genome shotgun sequence (87857 bp)
Overview 1 RT 1: 8189-12676 bp Neighborhood of RT #1 [8189, 12676] PRK05402 RVT-Retrons HTH_XRE Feature: gene Location: 8189-9034 bp Feature: gene Location: 9064-11052 bp Feature: domain Description: PRK05402 Location: 9151-11047 bp Feature: domain Description: PRK05402 Location: 9151-11047 bp Feature: gene Location: 11145-12110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11325-11847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1132 5-11847 bp Feature: gene Location: 12076-12417 bp Feature: domain Description: HTH_XRE Location: 12088-12256 bp Feature: domain Description: HTH_XRE Location: 12 088-12 2 56 bp Feature: gene Location: 12461-12676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05402 (1,4-alpha-glucan branching protein GlgB), RVT-Retrons, HTH_XRE (smart00530)

Seq: PKYT01000136.1 Acidobacteriaceae bacterium isolate palsa_271 73.20120500_P16.3_contig_571, whole genome shotgun sequence (39188 bp)
Overview 1 RT 1: 2829-11413 bp Neighborhood of RT #1 [2829, 11413] TPR TPR TPR STKc_PknB_like mod_pep_cyc RVT-GII GIIM RVT-GII RVT-GII PGAP1 Feature: gene Location: 2829-4055 bp Feature: domain Description: TPR Location: 2835-3219 bp Feature: domain Description: TPR Location: 283 5-3 219 bp Feature: domain Description: TPR Location: 3363-3669 bp Feature: domain Description: TPR Location: 3 3 63 -3 669 bp Feature: domain Description: TPR Location: 3699-3957 bp Feature: domain Description: TPR Location: 3 699-3 957 bp Feature: gene Location: 4133-5530 bp Feature: domain Description: STKc_PknB_like Location: 4187-4979 bp Feature: domain Description: STKc_PknB_like Location: 4187-4979 bp Feature: domain Description: mod_pep_cyc Location: 5069-5423 bp Feature: domain Description: mod_pep_cyc Location: 5069-5423 bp Feature: gene Location: 5727-7112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6063-6681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6063 -6681 bp Feature: domain Description: GIIM Note: maturase Location: 6729-6945 bp Feature: domain Description: GIIM Note: maturase Location: 6729-6945 bp Feature: gene Location: 7141-7422 bp Feature: gene Location: 7607-8221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7625-7841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7625-7841 bp Feature: gene Location: 8238-9116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8730-9102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873 0-9102 bp Feature: gene Location: 9465-10721 bp Feature: domain Description: PGAP1 Location: 10065-10440 bp Feature: domain Description: PGAP1 Location: 10065-10440 bp Feature: gene Location: 11183-11413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), STKc_PknB_like (cd14014), mod_pep_cyc (TIGR04510), RVT-GII, GIIM (pfam08388), PGAP1 (pfam07819)