myRT

myRT report for GCA_003132865.1_20120500_P14

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Seq: PKYZ01000547.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_2406, whole genome shotgun sequence (3208 bp)
Overview 1 RT 1: 41-3008 bp Neighborhood of RT #1 [41, 3013] RVT-DGRs Aldo_ket_red KOG4533 Feature: gene Location: 41-415 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44-197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44-1 97 bp Feature: gene Location: 735-1541 bp Feature: domain Description: Aldo_ket_red Location: 759-1485 bp Feature: domain Description: Aldo_ket_red Location: 759-1 485 bp Feature: gene Location: 2285-3013 bp Feature: domain Description: KOG4533 Location: 2306-3008 bp Feature: domain Description: KOG4533 Location: 2306-3008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Aldo_ket_red (pfam00248), KOG4533 (KOG4533, Uncharacterized conserved protein )

Seq: PKYZ01000182.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_2568, whole genome shotgun sequence (6301 bp)
Overview 1 RT 1: 6-3095 bp Neighborhood of RT #1 [6, 3095] RVT-GII TPR PEP_TPR_lipo TPR TPR Feature: gene Location: 6-989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94-951 bp Feature: gene Location: 1599-2774 bp Feature: domain Description: TPR Location: 1692-1836 bp Feature: domain Description: TPR Location: 1692 -1836 bp Feature: domain Description: PEP_TPR_lipo Location: 1860-2100 bp Feature: domain Description: PEP_TPR_lipo Location: 1860-2 100 bp Feature: domain Description: TPR Location: 2160-2415 bp Feature: domain Description: TPR Location: 2 160-2 415 bp Feature: domain Description: TPR Location: 2451-2712 bp Feature: domain Description: TPR Location: 2 451-2 712 bp Feature: gene Location: 2916-3095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TPR (smart00028), PEP_TPR_lipo (TIGR02917)

Seq: PKYZ01000557.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_395, whole genome shotgun sequence (10023 bp)
Overview 1 RT 1: 3-4663 bp Neighborhood of RT #1 [3, 4671] PRK06556 PRK06556 RVT-UG19 HTH_37 COG4679 Feature: gene Location: 3-1889 bp Feature: domain Description: PRK06556 Location: 6-1710 bp Feature: domain Description: PRK06556 Location: 6-1710 bp Feature: domain Description: PRK06556 Location: 1779-1887 bp Feature: domain Description: PRK06556 Location: 1779-1887 bp Feature: gene Location: 1934-3985 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 2300-2777 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 23 00-2777 bp Feature: gene Location: 4110-4418 bp Feature: domain Description: HTH_37 Location: 4173-4395 bp Feature: domain Description: HTH_3 7 Location: 4173 -43 95 bp Feature: gene Location: 4411-4671 bp Feature: domain Description: COG4679 Location: 4474-4663 bp Feature: domain Description: COG4679 Location: 4474-4663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06556 (vitamin B12-dependent ribonucleotide reductase; Validated), RVT-UG19, HTH_37 (pfam13744), COG4679 (Phage-related protein )

Seq: PKYZ01000597.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_4939, whole genome shotgun sequence (3016 bp)
Overview 1 RT 1: 594-2238 bp Neighborhood of RT #1 [594, 3014] PRK00153 recR RVT-UG12 Feature: gene Location: 594-776 bp Feature: domain Description: PRK00153 Location: 597-771 bp Feature: domain Description: PRK00153 Location: 597-771 bp Feature: gene Location: 780-1379 bp Feature: domain Description: recR Location: 795-1377 bp Feature: domain Description: recR Location: 795-1377 bp Feature: gene Location: 1410-3014 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1806-2238 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1806-2238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00153 (YbaB/EbfC family nucleoid-associated protein), recR (TIGR00615), RVT-UG12

Seq: PKYZ01000662.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_6439, whole genome shotgun sequence (19112 bp)
Overview 1 RT 1: 1-4104 bp Neighborhood of RT #1 [1, 4124] RVT-CRISPR GIIM Cas1_I-II-III Cas2_I_II_III CRISPR_Cas6 Feature: gene Location: 1-144 bp Feature: gene Location: 208-636 bp Feature: gene Location: 464-2776 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 680-1292 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 680-1292 bp Feature: domain Description: GIIM Note: maturase Location: 1361-1544 bp Feature: domain Description: GIIM Note: maturase Location: 1361-15 44 bp Feature: domain Description: Cas1_I-II-III Location: 1772-2741 bp Feature: domain Description: Cas1_I-II-III Location: 1772-2741 bp Feature: gene Location: 2807-3073 bp Feature: domain Description: Cas2_I_II_III Location: 2819-3047 bp Feature: domain Description: Cas2_I_II_III Location: 2819-3047 bp Feature: gene Location: 3117-4124 bp Feature: domain Description: CRISPR_Cas6 Location: 3753-4104 bp Feature: domain Description: CRISPR_Cas6 Location: 375 3-4104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040)

Seq: PKYZ01000612.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_8098, whole genome shotgun sequence (3907 bp)
Overview 1 RT 1: 3147-3904 bp Neighborhood of RT #1 [3147, 3906] RVT-GII GIIM Feature: gene Location: 3147-3308 bp Feature: gene Location: 3317-3451 bp Feature: gene Location: 3460-3906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3463-3676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346 3-36 76 bp Feature: domain Description: GIIM Note: maturase Location: 3790-3904 bp Feature: domain Description: GIIM Note: maturase Location: 3790-3904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PKYZ01000447.1 Bryobacterales bacterium isolate palsa_268 73.20120500_P14.26_contig_942, whole genome shotgun sequence (9886 bp)
Overview 1 RT 1: 5850-8015 bp Neighborhood of RT #1 [5850, 8015] PIN_Sll0205-like RVT-Retrons Feature: gene Location: 5850-6176 bp Feature: domain Description: PIN_Sll0205-like Location: 5859-6171 bp Feature: domain Description: PIN_Sll0205-like Location: 5859-617 1 bp Feature: gene Location: 6221-6448 bp Feature: gene Location: 6510-7547 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6720-7365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67 20-7 365 bp Feature: gene Location: 7550-7750 bp Feature: gene Location: 7866-8015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_Sll0205-like (cd09872), RVT-Retrons