myRT

myRT report for GCA_003132905.1_20120500_P13

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Seq: PKZC01000386.1 Bryobacterales bacterium isolate palsa_265 73.20120500_P13.26_contig_4666, whole genome shotgun sequence (27705 bp)
Overview 1 RT 1: 24960-27702 bp Neighborhood of RT #1 [24960, 27702] RVT-GII Feature: gene Location: 24960-25256 bp Feature: gene Location: 25468-25731 bp Feature: gene Location: 26041-26202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26107-26188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 07-261 88 bp Feature: gene Location: 26293-27702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PKZC01000380.1 Bryobacterales bacterium isolate palsa_265 73.20120500_P13.26_contig_5144, whole genome shotgun sequence (19936 bp)
Overview 1 RT 1: 9184-15026 bp Neighborhood of RT #1 [9184, 15889] DUF262 COG3472 RVT-Retrons ycf46 Soli_cterm Feature: gene Location: 9184-9315 bp Feature: gene Location: 9475-11022 bp Feature: domain Description: DUF262 Location: 9526-10093 bp Feature: domain Description: DUF2 62 Location: 952 6-10093 bp Feature: domain Description: COG3472 Location: 10249-10993 bp Feature: domain Description: COG3472 Location: 102 49-10993 bp Feature: gene Location: 11175-12521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11706-12348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11706-12 348 bp Feature: gene Location: 12659-14164 bp Feature: domain Description: ycf46 Location: 12728-14138 bp Feature: domain Description: ycf46 Location: 12 72 8-14138 bp Feature: gene Location: 14252-15889 bp Feature: domain Description: Soli_cterm Location: 14387-15026 bp Feature: domain Description: Soli_cterm Location: 14387-1502 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ycf46 (CHL00195), Soli_cterm (TIGR03437), DUF262 (pfam03235), COG3472 (Uncharacterized protein )

Seq: PKZC01000139.1 Bryobacterales bacterium isolate palsa_265 73.20120500_P13.26_contig_60995, whole genome shotgun sequence (4724 bp)
Overview 1 RT 1: 121-3739 bp Neighborhood of RT #1 [121, 3762] RVT-GII GIIM COG3464 COG3464 Feature: gene Location: 121-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124-502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124-502 bp Feature: domain Description: GIIM Note: maturase Location: 580-802 bp Feature: domain Description: GIIM Note: maturase Location: 580-802 bp Feature: gene Location: 986-2092 bp Feature: gene Location: 2140-3762 bp Feature: domain Description: COG3464 Location: 2209-2866 bp Feature: domain Description: COG3 464 Location: 2209-2866 bp Feature: domain Description: COG3464 Location: 3097-3739 bp Feature: domain Description: COG3 464 Location: 3 097-3 73 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3464 (Transposase )

Seq: PKZC01000290.1 Bryobacterales bacterium isolate palsa_265 73.20120500_P13.26_contig_8471, whole genome shotgun sequence (21322 bp)
Overview 1 RT 1: 3-1915 bp Neighborhood of RT #1 [3, 1915] RVT-GII GIIM HTH_MerR-like_sg6 Feature: gene Location: 3-1034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-4 59 bp Feature: domain Description: GIIM Note: maturase Location: 654-876 bp Feature: domain Description: GIIM Note: maturase Location: 654 -876 bp Feature: gene Location: 1081-1335 bp Feature: domain Description: HTH_MerR-like_sg6 Location: 1084-1294 bp Feature: domain Description: HTH_MerR-like_sg6 Location: 1084 -1294 bp Feature: gene Location: 1457-1915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_MerR-like_sg6 (cd04781), RVT-GII, GIIM (pfam08388)