myRT

myRT report for GCA_003132985.1_20120500_P13

Download annotations/find similar RTs

Seq: PKZF01000091.1 Acidobacteriaceae bacterium isolate palsa_266 73.20120500_P13.2_contig_1836, whole genome shotgun sequence (120749 bp)
Overview 1 RT 1: 8293-12780 bp Neighborhood of RT #1 [8293, 12780] PRK05402 RVT-Retrons HTH_XRE Feature: gene Location: 8293-9138 bp Feature: gene Location: 9168-11156 bp Feature: domain Description: PRK05402 Location: 9255-11151 bp Feature: domain Description: PRK05402 Location: 9255-1 1 1 51 bp Feature: gene Location: 11249-12214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11429-11951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 429-1 1 951 bp Feature: gene Location: 12180-12521 bp Feature: domain Description: HTH_XRE Location: 12192-12360 bp Feature: domain Description: HTH_XRE Location: 1 21 92-1 2360 bp Feature: gene Location: 12565-12780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), PRK05402 (1,4-alpha-glucan branching protein GlgB)

Seq: PKZF01000028.1 Acidobacteriaceae bacterium isolate palsa_266 73.20120500_P13.2_contig_708, whole genome shotgun sequence (7043 bp)
Overview 1 RT 1: 127-5248 bp Neighborhood of RT #1 [127, 5248] RVT-GII GIIM STKc_PknB_like mod_pep_cyc Feature: gene Location: 127-408 bp Feature: gene Location: 437-1822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1439-1655 bp Feature: domain Description: GIIM Note: maturase Location: 1439-1655 bp Feature: gene Location: 2019-4817 bp Feature: domain Description: STKc_PknB_like Location: 2073-2865 bp Feature: domain Description: STKc_PknB_like Location: 2 073-2 865 bp Feature: domain Description: mod_pep_cyc Location: 2955-4638 bp Feature: domain Description: mod_pep_cyc Location: 2 955-4638 bp Feature: gene Location: 5024-5248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), mod_pep_cyc (TIGR04510), RVT-GII, GIIM (pfam08388)