myRT

myRT report for GCA_003133205.1_20120500_P28

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Seq: PKWK01000009.1 Granulicella sp. isolate palsa_288 73.20120500_P28.9_contig_1494, whole genome shotgun sequence (98892 bp)
Overview 1 RT 1: 87218-92110 bp Neighborhood of RT #1 [87218, 92110] PRTRC_parB RVT-GII GIIM Feature: gene Location: 87218-88666 bp Feature: domain Description: PRTRC_parB Location: 87224-87914 bp Feature: domain Description: PRTRC_parB Location: 87224-8791 4 bp Feature: gene Location: 88960-89172 bp Feature: gene Location: 89186-90568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89525-90143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89525-901 43 bp Feature: domain Description: GIIM Note: maturase Location: 90197-90413 bp Feature: domain Description: GIIM Note: maturase Location: 901 97-9041 3 bp Feature: gene Location: 90645-90932 bp Feature: gene Location: 91220-92110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_parB (TIGR03734), RVT-GII, GIIM (pfam08388)

Seq: PKWK01000380.1 Granulicella sp. isolate palsa_288 73.20120500_P28.9_contig_23390, whole genome shotgun sequence (17979 bp)
Overview 1 RT 1: 3012-7048 bp Neighborhood of RT #1 [3012, 10344] DUF5615 RVT-Retrons RVT-Retrons MviM CarboxypepD_reg Feature: gene Location: 3012-3470 bp Feature: gene Location: 3472-3843 bp Feature: domain Description: DUF5615 Location: 3481-3727 bp Feature: domain Description: DUF5615 Location: 3481-372 7 bp Feature: gene Location: 3873-5480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4707-5094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4707-5094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5097-5250 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5097-52 50 bp Feature: gene Location: 5545-6549 bp Feature: domain Description: MviM Location: 5548-6538 bp Feature: domain Description: MviM Location: 5548-6538 bp Feature: gene Location: 6709-10344 bp Feature: domain Description: CarboxypepD_reg Location: 6805-7048 bp Feature: domain Description: CarboxypepD_reg Location: 6805-7048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5615 (pfam18480), RVT-Retrons, MviM (COG0673), CarboxypepD_reg (pfam13620)

Seq: PKWK01000297.1 Granulicella sp. isolate palsa_288 73.20120500_P28.9_contig_51541, whole genome shotgun sequence (2757 bp)
Overview 1 RT 1: 3-2721 bp Neighborhood of RT #1 [3, 2756] Meth_synt_1 RVT-GII GIIM OmpR Feature: gene Location: 3-356 bp Feature: domain Description: Meth_synt_1 Location: 33-357 bp Feature: domain Description: Meth_synt_1 Location: 3 3 -3 57 bp Feature: gene Location: 513-1874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867-153 0 bp Feature: domain Description: GIIM Note: maturase Location: 1605-1806 bp Feature: domain Description: GIIM Note: maturase Location: 1605-1806 bp Feature: gene Location: 2400-2756 bp Feature: domain Description: OmpR Location: 2418-2721 bp Feature: domain Description: OmpR Location: 2418-2721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), Meth_synt_1 (pfam08267), RVT-GII, GIIM (pfam08388)