myRT

myRT report for GCA_003133225.1_20120500_P28

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Seq: PKWL01000098.1 Janthinobacterium sp. isolate palsa_998 73.20120500_P28.8_contig_17, whole genome shotgun sequence (114271 bp)
Overview 1 RT 1: 20974-23992 bp Neighborhood of RT #1 [20974, 23992] TF_pcaQ RVT-GII PBP2_ThiY_THI5_like_1 Feature: gene Location: 20974-22002 bp Feature: domain Description: TF_pcaQ Location: 21028-21913 bp Feature: domain Description: TF_pcaQ Location: 21 028-21 91 3 bp Feature: gene Location: 22059-22268 bp Feature: gene Location: 22308-22451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22359-22410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22359-2241 0 bp Feature: gene Location: 22490-23506 bp Feature: domain Description: PBP2_ThiY_THI5_like_1 Location: 22655-23231 bp Feature: domain Description: PBP2_ThiY_THI5_like_1 Location: 22655-23231 bp Feature: gene Location: 23804-23992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TF_pcaQ (TIGR02424), RVT-GII, PBP2_ThiY_THI5_like_1 (cd13652)

Seq: PKWL01000154.1 Janthinobacterium sp. isolate palsa_998 73.20120500_P28.8_contig_290, whole genome shotgun sequence (42096 bp)
Overview 1 RT 1: 28473-37798 bp Neighborhood of RT #1 [28473, 37798] HxlR RVT_N RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII GIIM Feature: gene Location: 28473-28835 bp Feature: domain Description: HxlR Location: 28506-28797 bp Feature: domain Description: HxlR Location: 2 8506-2 8797 bp Feature: gene Location: 29074-29271 bp Feature: gene Location: 29393-30928 bp Feature: domain Description: RVT_N Location: 29396-29579 bp Feature: domain Description: RVT_N Location: 2 9396-2 9579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29624-30260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 962 4-302 60 bp Feature: domain Description: GIIM Note: maturase Location: 30311-30545 bp Feature: domain Description: GIIM Note: maturase Location: 30311-30545 bp Feature: gene Location: 30974-32281 bp Feature: domain Description: Phage_int_SAM_1 Location: 31391-31625 bp Feature: domain Description: Phage_int_SAM_1 Location: 31391-3162 5 bp Feature: domain Description: INT_RitA_C_like Location: 31730-32234 bp Feature: domain Description: INT_RitA_C_like Location: 31730-32 2 34 bp Feature: gene Location: 32278-33249 bp Feature: domain Description: INT_RitB_C_like Location: 32611-33208 bp Feature: domain Description: INT_RitB_C_like Location: 32 611-332 08 bp Feature: gene Location: 33246-34271 bp Feature: domain Description: Phage_int_SAM_1 Location: 33297-33543 bp Feature: domain Description: Phage_int_SAM_1 Location: 332 97-33543 bp Feature: domain Description: INT_RitC_C_like Location: 33636-34182 bp Feature: domain Description: INT_RitC_C_like Location: 33636-34182 bp Feature: gene Location: 35095-36726 bp Feature: domain Description: RVT_N Location: 35185-35362 bp Feature: domain Description: RVT_N Location: 35185-35362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35407-36043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35407-36043 bp Feature: domain Description: GIIM Note: maturase Location: 36094-36328 bp Feature: domain Description: GIIM Note: maturase Location: 36094-3632 8 bp Feature: gene Location: 37112-37258 bp Feature: gene Location: 37580-37798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182)

Seq: PKWL01000078.1 Janthinobacterium sp. isolate palsa_998 73.20120500_P28.8_contig_3363, whole genome shotgun sequence (12241 bp)
Overview 1 RT 1: 3-3259 bp Neighborhood of RT #1 [3, 3297] MFS_MefA_like RVT-GII GIIM TF_pcaQ DDE_Tnp_1 Feature: gene Location: 3-419 bp Feature: domain Description: MFS_MefA_like Location: 96-402 bp Feature: domain Description: MFS_MefA_like Location: 96-402 bp Feature: gene Location: 528-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-13 26 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1602 bp Feature: domain Description: GIIM Note: maturase Location: 13 86-1602 bp Feature: gene Location: 1889-2857 bp Feature: domain Description: TF_pcaQ Location: 1913-2834 bp Feature: domain Description: TF_pcaQ Location: 1913 -283 4 bp Feature: gene Location: 3019-3297 bp Feature: domain Description: DDE_Tnp_1 Location: 3130-3259 bp Feature: domain Description: DDE_Tnp_1 Location: 3 13 0-3 259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), RVT-GII, GIIM (pfam08388), TF_pcaQ (TIGR02424), DDE_Tnp_1 (pfam01609)

Seq: PKWL01000114.1 Janthinobacterium sp. isolate palsa_998 73.20120500_P28.8_contig_863, whole genome shotgun sequence (76752 bp)
Overview 1 RT 1: 5370-9888 bp Neighborhood of RT #1 [5370, 9926] DUF3579 RVT-GII PqqL PqqL Feature: gene Location: 5370-5711 bp Feature: domain Description: DUF3579 Location: 5409-5673 bp Feature: domain Description: DUF3579 Location: 54 09-5673 bp Feature: gene Location: 6345-6524 bp Feature: gene Location: 6524-6715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6527-6659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6527-6659 bp Feature: gene Location: 6765-7031 bp Feature: gene Location: 7182-9926 bp Feature: domain Description: PqqL Location: 7290-8529 bp Feature: domain Description: PqqL Location: 7290-8529 bp Feature: domain Description: PqqL Location: 8664-9888 bp Feature: domain Description: PqqL Location: 8664 -9888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3579 (pfam12112), RVT-GII, PqqL (COG0612)