myRT

myRT report for GCA_003133245.1_20120500_P28

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Seq: PKWM01000031.1 Rhodoferax sp. isolate palsa_997 73.20120500_P28.7_contig_218, whole genome shotgun sequence (132375 bp)
Overview 1 RT 1: 10647-16160 bp Neighborhood of RT #1 [10647, 16171] egtB_egtB_egtB_TIGR03440 egtD_ergothio RVT-GII GIIM YHI9 Feature: gene Location: 10647-12014 bp Feature: domain Description: egtB_egtB_egtB_TIGR03440 Location: 10668-11868 bp Feature: domain Description: egtB_egtB_egtB_TIGR03440 Location: 1 0668-1 1 868 bp Feature: gene Location: 12039-13007 bp Feature: domain Description: egtD_ergothio Location: 12114-12996 bp Feature: domain Description: egtD_ergothio Location: 1 21 1 4-1 2996 bp Feature: gene Location: 13541-14899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13898-14516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3898-1 451 6 bp Feature: domain Description: GIIM Note: maturase Location: 14564-14786 bp Feature: domain Description: GIIM Note: maturase Location: 1 4564-1 4786 bp Feature: gene Location: 14985-15161 bp Feature: gene Location: 15386-16171 bp Feature: domain Description: YHI9 Location: 15389-16160 bp Feature: domain Description: YHI9 Location: 1 5389-1 61 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT egtB_egtB_egtB_TIGR03440, egtD_ergothio (TIGR03438), RVT-GII, GIIM (pfam08388), YHI9 (COG0384)

Seq: PKWM01000051.1 Rhodoferax sp. isolate palsa_997 73.20120500_P28.7_contig_274, whole genome shotgun sequence (35097 bp)
Overview 1 RT 1: 31029-35082 bp Neighborhood of RT #1 [31029, 35096] KOG1752 PRK03584 RVT_N RVT-GII Feature: gene Location: 31029-31394 bp Feature: domain Description: KOG1752 Location: 31113-31389 bp Feature: domain Description: KOG1752 Location: 31113-31389 bp Feature: gene Location: 31440-33530 bp Feature: domain Description: PRK03584 Location: 31452-33483 bp Feature: domain Description: PRK03584 Location: 31452 -33483 bp Feature: gene Location: 34554-35096 bp Feature: RT Description: RVT_N Location: 34632-34866 bp Feature: RT Description: RVT_N Location: 34632 -34866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34920-35082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492 0-35082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1752 (KOG1752, Glutaredoxin and related proteins ), PRK03584 (acetoacetate--CoA ligase), RVT_N (pfam13655), RVT-GII

Seq: PKWM01000049.1 Rhodoferax sp. isolate palsa_997 73.20120500_P28.7_contig_6399, whole genome shotgun sequence (9511 bp)
Overview 1 RT 1: 5628-9343 bp Neighborhood of RT #1 [5628, 9405] PRK11713 COG3178 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5628-6596 bp Feature: domain Description: PRK11713 Location: 5799-6585 bp Feature: domain Description: PRK11713 Location: 5799-6585 bp Feature: gene Location: 6442-7671 bp Feature: domain Description: COG3178 Location: 6610-7639 bp Feature: domain Description: COG3 178 Location: 6610-763 9 bp Feature: gene Location: 7681-9405 bp Feature: RT Description: RVT_N Location: 7732-7975 bp Feature: RT Description: RVT_N Location: 773 2-7975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8020-8668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8020-8668 bp Feature: domain Description: GIIM Note: maturase Location: 8719-8956 bp Feature: domain Description: GIIM Note: maturase Location: 8719-8956 bp Feature: domain Description: HNHc Note: nucleases Location: 9172-9343 bp Feature: domain Description: HNHc Note: nucleases Location: 9172-93 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11713 (16S ribosomal RNA methyltransferase RsmE; Provisional), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)