myRT

myRT report for GCA_003134015.1_20111000_S3D

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Seq: PLAB01000003.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1420 73.20111000_S3D.13_contig_1077, whole genome shotgun sequence (5169 bp)
Overview 1 RT 1: 2857-4801 bp Neighborhood of RT #1 [2857, 5037] RVT_N RVT-GII GIIM Feature: gene Location: 2857-3141 bp Feature: gene Location: 3235-3483 bp Feature: gene Location: 3529-5037 bp Feature: RT Description: RVT_N Location: 3580-3823 bp Feature: RT Description: RVT_N Location: 3580-3823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3868-4513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3868-451 3 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4801 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLAB01000064.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1420 73.20111000_S3D.13_contig_1396, whole genome shotgun sequence (40257 bp)
Overview 1 RT 1: 33900-37337 bp Neighborhood of RT #1 [33900, 37337] KdpC RVT-GII GIIM Feature: gene Location: 33900-34523 bp Feature: domain Description: KdpC Location: 33918-34473 bp Feature: domain Description: KdpC Location: 33918-34473 bp Feature: gene Location: 34970-35140 bp Feature: gene Location: 35176-36060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35182-35536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35182 -35536 bp Feature: domain Description: GIIM Note: maturase Location: 35596-35824 bp Feature: domain Description: GIIM Note: maturase Location: 35596-3582 4 bp Feature: gene Location: 36327-36458 bp Feature: gene Location: 37050-37337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)

Seq: PLAB01000146.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1420 73.20111000_S3D.13_contig_283, whole genome shotgun sequence (24111 bp)
Overview 1 RT 1: 18086-21128 bp Neighborhood of RT #1 [18086, 21128] HTH_XRE RVT_N RVT-GII GIIM Feature: gene Location: 18086-18271 bp Feature: gene Location: 18303-18704 bp Feature: domain Description: HTH_XRE Location: 18528-18690 bp Feature: domain Description: HTH_XRE Location: 18528-18690 bp Feature: gene Location: 18835-20343 bp Feature: RT Description: RVT_N Location: 18886-19129 bp Feature: RT Description: RVT_N Location: 18886-19129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19174-19819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19174-19819 bp Feature: domain Description: GIIM Note: maturase Location: 19879-20107 bp Feature: domain Description: GIIM Note: maturase Location: 19879-20107 bp Feature: gene Location: 20428-20700 bp Feature: gene Location: 20943-21128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)