myRT

myRT report for GCA_003134075.1_20111000_S2M

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Seq: PLAI01000013.1 Methylocystaceae bacterium isolate bog_906 73.20111000_S2M.28_contig_18375, whole genome shotgun sequence (6285 bp)
Overview 1 RT 1: 2587-6282 bp Neighborhood of RT #1 [2587, 6282] LysR RVT-GII InsE Feature: gene Location: 2587-3165 bp Feature: gene Location: 3258-4307 bp Feature: domain Description: LysR Location: 3303-4152 bp Feature: domain Description: LysR Location: 3303-41 52 bp Feature: gene Location: 4620-5342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4632-4962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4632-4962 bp Feature: gene Location: 5704-5859 bp Feature: domain Description: InsE Location: 5737-5848 bp Feature: domain Description: InsE Location: 5737-5848 bp Feature: gene Location: 5923-6282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-GII, InsE (COG2963)

Seq: PLAI01000185.1 Methylocystaceae bacterium isolate bog_906 73.20111000_S2M.28_contig_4100, whole genome shotgun sequence (6792 bp)
Overview 1 RT 1: 1207-5887 bp Neighborhood of RT #1 [1207, 6111] SDR_subfam_1 bicupin_oxalic RVT-GII GIIM PinE Feature: gene Location: 1207-2088 bp Feature: domain Description: SDR_subfam_1 Location: 1243-2074 bp Feature: domain Description: SDR_subfam_1 Location: 12 43-2 074 bp Feature: gene Location: 2197-3441 bp Feature: domain Description: bicupin_oxalic Location: 2326-3433 bp Feature: domain Description: bicupin_oxalic Location: 2 32 6-3433 bp Feature: gene Location: 3918-4709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3924-4275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 4-42 75 bp Feature: domain Description: GIIM Note: maturase Location: 4323-4551 bp Feature: domain Description: GIIM Note: maturase Location: 432 3-4551 bp Feature: gene Location: 4718-5092 bp Feature: gene Location: 5254-6111 bp Feature: domain Description: PinE Location: 5302-5887 bp Feature: domain Description: PinE Location: 5302 -5887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SDR_subfam_1 (TIGR03971), bicupin_oxalic (TIGR03404), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: PLAI01000011.1 Methylocystaceae bacterium isolate bog_906 73.20111000_S2M.28_contig_9525, whole genome shotgun sequence (16534 bp)
Overview 1 RT 1: 2652-5014 bp Neighborhood of RT #1 [2652, 5112] fixJ RVT-GII Rep_3 PHA02518 Feature: gene Location: 2652-2876 bp Feature: gene Location: 2962-3363 bp Feature: domain Description: fixJ Location: 2974-3346 bp Feature: domain Description: fixJ Location: 2974-3 3 46 bp Feature: gene Location: 3403-3702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490-3664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 490-3 664 bp Feature: gene Location: 3706-4359 bp Feature: domain Description: Rep_3 Location: 3712-3985 bp Feature: domain Description: Rep_3 Location: 3 712-3 985 bp Feature: gene Location: 4462-5112 bp Feature: domain Description: PHA02518 Location: 4471-5014 bp Feature: domain Description: PHA02518 Location: 4471-5014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fixJ (PRK09390), RVT-GII, Rep_3 (pfam01051), PHA02518 (ParA-like protein; Provisional)