myRT

myRT report for GCA_003134155.1_20111000_S2M

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Seq: PLAM01000200.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1419 73.20111000_S2M.13_contig_2048, whole genome shotgun sequence (45936 bp)
Overview 1 RT 1: 147-2655 bp Neighborhood of RT #1 [147, 2705] RVT-GII GIIM KdpC Feature: gene Location: 147-278 bp Feature: gene Location: 545-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 -905 bp Feature: domain Description: GIIM Note: maturase Location: 965-1193 bp Feature: domain Description: GIIM Note: maturase Location: 965-1 1 93 bp Feature: gene Location: 1465-1635 bp Feature: gene Location: 2082-2705 bp Feature: domain Description: KdpC Location: 2100-2655 bp Feature: domain Description: KdpC Location: 21 00-2655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)

Seq: PLAM01000033.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1419 73.20111000_S2M.13_contig_4148, whole genome shotgun sequence (5169 bp)
Overview 1 RT 1: 2857-4801 bp Neighborhood of RT #1 [2857, 5037] RVT_N RVT-GII GIIM Feature: gene Location: 2857-3141 bp Feature: gene Location: 3235-3483 bp Feature: gene Location: 3529-5037 bp Feature: RT Description: RVT_N Location: 3580-3823 bp Feature: RT Description: RVT_N Location: 3580-382 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3868-4513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3868-4513 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4801 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLAM01000091.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1419 73.20111000_S2M.13_contig_4150, whole genome shotgun sequence (24108 bp)
Overview 1 RT 1: 2981-6023 bp Neighborhood of RT #1 [2981, 6023] RVT_N RVT-GII GIIM HTH_XRE Feature: gene Location: 2981-3166 bp Feature: gene Location: 3409-3681 bp Feature: gene Location: 3766-5274 bp Feature: RT Description: RVT_N Location: 3817-4060 bp Feature: RT Description: RVT_N Location: 3 817-4060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4105-4750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4105-4750 bp Feature: domain Description: GIIM Note: maturase Location: 4810-5038 bp Feature: domain Description: GIIM Note: maturase Location: 4810-503 8 bp Feature: gene Location: 5405-5806 bp Feature: domain Description: HTH_XRE Location: 5630-5792 bp Feature: domain Description: HTH_XRE Location: 563 0-5792 bp Feature: gene Location: 5838-6023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)