myRT

myRT report for GCA_003135055.1_20111000_P2M

Download annotations/find similar RTs

Seq: PLDF01000094.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_1172, whole genome shotgun sequence (12251 bp)
Overview 1 RT 1: 3-2077 bp Neighborhood of RT #1 [3, 2077] RVT-GII GIIM Feature: gene Location: 3-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-231 bp Feature: domain Description: GIIM Note: maturase Location: 282-489 bp Feature: domain Description: GIIM Note: maturase Location: 282-489 bp Feature: gene Location: 733-1125 bp Feature: gene Location: 959-2077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLDF01000221.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_1220, whole genome shotgun sequence (55874 bp)
Overview 1 RT 1: 37884-45479 bp Neighborhood of RT #1 [37884, 45487] MviM RVT-DGRs Avd_like DUF4062 COG5635 COG5635 YfmG Feature: gene Location: 37884-38648 bp Feature: domain Description: MviM Location: 37887-38589 bp Feature: domain Description: MviM Location: 37887-38589 bp Feature: gene Location: 38880-40487 bp Feature: gene Location: 41023-42018 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41182-41824 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41182 -4182 4 bp Feature: gene Location: 42053-42418 bp Feature: domain Description: Avd_like Location: 42083-42392 bp Feature: domain Description: Avd_like Location: 42 083-42 392 bp Feature: gene Location: 42488-45487 bp Feature: domain Description: DUF4062 Location: 42593-42851 bp Feature: domain Description: DUF4062 Location: 42 593-42 851 bp Feature: domain Description: COG5635 Location: 43280-43415 bp Feature: domain Description: COG5635 Location: 432 80-43415 bp Feature: domain Description: COG5635 Location: 43640-44051 bp Feature: domain Description: COG5635 Location: 43640-44051 bp Feature: domain Description: YfmG Location: 44768-45479 bp Feature: domain Description: YfmG Location: 44768-45479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), RVT-DGRs, Avd_like (cd16376), DUF4062 (pfam13271), COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262)

Seq: PLDF01000504.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_205, whole genome shotgun sequence (42597 bp)
Overview 1 RT 1: 16654-19151 bp Neighborhood of RT #1 [16654, 19151] RVT-GII RVT-GII Feature: gene Location: 16654-16989 bp Feature: gene Location: 17560-18192 bp Feature: gene Location: 18189-18563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18294-18402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18294-18402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18426-18558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18426-18558 bp Feature: gene Location: 18600-18734 bp Feature: gene Location: 18915-19151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLDF01000172.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_2891, whole genome shotgun sequence (40258 bp)
Overview 1 RT 1: 18829-22574 bp Neighborhood of RT #1 [18829, 22574] RVT-GII Feature: gene Location: 18829-20085 bp Feature: gene Location: 20304-20675 bp Feature: gene Location: 20759-21010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20777-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20777-20951 bp Feature: gene Location: 21841-22269 bp Feature: gene Location: 22284-22574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLDF01000515.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_442, whole genome shotgun sequence (59522 bp)
Overview 1 RT 1: 9975-14727 bp 2 RT 2: 41980-47976 bp Neighborhood of RT #1 [9975, 14727] fabG RVT-GII MazF Neighborhood of RT #2 [41980, 47987] GATase1_PfpI_1 GIIM RVT-GII COG1787 PRK05298 Feature: gene Location: 9975-11846 bp Feature: gene Location: 12052-12951 bp Feature: domain Description: fabG Location: 12223-12940 bp Feature: domain Description: fabG Location: 12223-12940 bp Feature: gene Location: 13119-13427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13173-13275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13173-13275 bp Feature: gene Location: 13976-14512 bp Feature: domain Description: MazF Location: 13982-14258 bp Feature: domain Description: MazF Location: 13982-1425 8 bp Feature: gene Location: 14533-14727 bp Feature: gene Location: 41980-42531 bp Feature: domain Description: GATase1_PfpI_1 Location: 41992-42520 bp Feature: domain Description: GATase1_PfpI_1 Location: 41992-425 20 bp Feature: gene Location: 42931-43194 bp Feature: domain Description: GIIM Note: maturase Location: 42967-43087 bp Feature: domain Description: GIIM Note: maturase Location: 42967-43087 bp Feature: gene Location: 43257-43427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43260-43401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43260-43401 bp Feature: gene Location: 44785-45495 bp Feature: domain Description: COG1787 Location: 45100-45439 bp Feature: domain Description: COG1787 Location: 45 100-45 439 bp Feature: gene Location: 46011-47987 bp Feature: domain Description: PRK05298 Location: 46020-47976 bp Feature: domain Description: PRK05 298 Location: 46020-47976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fabG (PRK12825), RVT-GII, MazF (COG2337), GATase1_PfpI_1 (cd03169), GIIM (pfam08388), COG1787 (Endonuclease, HJR/Mrr/RecB family ), PRK05298 (excinuclease ABC subunit UvrB)

Seq: PLDF01000211.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_718, whole genome shotgun sequence (63017 bp)
Overview 1 RT 1: 5779-10139 bp Neighborhood of RT #1 [5779, 10351] YcjR RVT-Retrons DltB Feature: gene Location: 5779-6612 bp Feature: domain Description: YcjR Location: 5794-6565 bp Feature: domain Description: YcjR Location: 5794-6 56 5 bp Feature: gene Location: 6554-6946 bp Feature: gene Location: 7035-8366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7497-8136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7497-8136 bp Feature: gene Location: 8425-8676 bp Feature: gene Location: 8957-10351 bp Feature: domain Description: DltB Location: 8972-10139 bp Feature: domain Description: DltB Location: 8972-10139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjR (COG1082), RVT-Retrons, DltB (COG1696)

Seq: PLDF01000241.1 Bryobacterales bacterium isolate palsa_243 73.20111000_P2M.18_contig_82, whole genome shotgun sequence (35613 bp)
Overview 1 RT 1: 130-3214 bp Neighborhood of RT #1 [130, 3214] RVT-GII GIIM Feature: gene Location: 130-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-107 8 bp Feature: domain Description: GIIM Note: maturase Location: 1129-1312 bp Feature: domain Description: GIIM Note: maturase Location: 1129-1312 bp Feature: gene Location: 2779-2919 bp Feature: gene Location: 2930-3214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)