myRT

myRT report for GCA_003135715.1_20111000_P3D

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Seq: PLCV01000035.1 Acidimicrobiaceae bacterium isolate palsa_606 73.20111000_P3D.18_contig_4679, whole genome shotgun sequence (20620 bp)
Overview 1 RT 1: 9803-14503 bp Neighborhood of RT #1 [9803, 14503] NERD RVT-GII GIIM COG2865 Feature: gene Location: 9803-10618 bp Feature: domain Description: NERD Location: 10079-10325 bp Feature: domain Description: NERD Location: 1 0079-1 0325 bp Feature: gene Location: 10930-11676 bp Feature: gene Location: 11344-12618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11560-12220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 560-1 2220 bp Feature: domain Description: GIIM Note: maturase Location: 12310-12523 bp Feature: domain Description: GIIM Note: maturase Location: 1 231 0-1 2523 bp Feature: gene Location: 12960-14246 bp Feature: domain Description: COG2865 Location: 13059-13458 bp Feature: domain Description: COG2865 Location: 1 3059-1 3458 bp Feature: gene Location: 14297-14503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG2865 (Predicted transcriptional regulator, contains HTH domain ), NERD (pfam08378)

Seq: PLCV01000096.1 Acidimicrobiaceae bacterium isolate palsa_606 73.20111000_P3D.18_contig_5717, whole genome shotgun sequence (46677 bp)
Overview 1 RT 1: 31647-36547 bp Neighborhood of RT #1 [31647, 36547] ANTAR CypX RVT-GII GIIM Feature: gene Location: 31647-31943 bp Feature: domain Description: ANTAR Location: 31794-31920 bp Feature: domain Description: ANTAR Location: 31794-3192 0 bp Feature: gene Location: 31970-33196 bp Feature: domain Description: CypX Location: 32012-33170 bp Feature: domain Description: CypX Location: 32 012 -33170 bp Feature: gene Location: 33307-34650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33628-34255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362 8-342 55 bp Feature: domain Description: GIIM Note: maturase Location: 34345-34558 bp Feature: domain Description: GIIM Note: maturase Location: 34345-34558 bp Feature: gene Location: 35294-35983 bp Feature: gene Location: 36032-36547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANTAR (smart01012), CypX (COG2124), RVT-GII, GIIM (pfam08388)

Seq: PLCV01000060.1 Acidimicrobiaceae bacterium isolate palsa_606 73.20111000_P3D.18_contig_6248, whole genome shotgun sequence (115755 bp)
Overview 1 RT 1: 57744-62660 bp Neighborhood of RT #1 [57744, 62660] PRK00174 RVT-GII Feature: gene Location: 57744-59867 bp Feature: domain Description: PRK00174 Location: 57897-59784 bp Feature: domain Description: PRK00174 Location: 57897-59784 bp Feature: gene Location: 60526-61245 bp Feature: gene Location: 61429-61875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61567-61870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61567-61870 bp Feature: gene Location: 62291-62422 bp Feature: gene Location: 62484-62660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00174 (acetyl-CoA synthetase; Provisional), RVT-GII