myRT

myRT report for GCA_003135875.1_20111000_P3D

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Seq: PNBF01000048.1 Acidobacteriaceae bacterium isolate palsa_250 73.20111000_P3D.50_contig_11309, whole genome shotgun sequence (5210 bp)
Overview 1 RT 1: 3232-5206 bp Neighborhood of RT #1 [3232, 5208] DUF2934 RVT-GII DDE_3 Feature: gene Location: 3232-3435 bp Feature: gene Location: 3566-3895 bp Feature: domain Description: DUF2934 Location: 3785-3881 bp Feature: domain Description: DUF2934 Location: 3785-3881 bp Feature: gene Location: 4161-4784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4176-4431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 76-4431 bp Feature: gene Location: 4765-5208 bp Feature: domain Description: DDE_3 Location: 4936-5206 bp Feature: domain Description: DDE_3 Location: 4936-5206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2934 (pfam11154), RVT-GII, DDE_3 (pfam13358)

Seq: PNBF01000705.1 Acidobacteriaceae bacterium isolate palsa_250 73.20111000_P3D.50_contig_14691, whole genome shotgun sequence (12825 bp)
Overview 1 RT 1: 5649-11398 bp Neighborhood of RT #1 [5649, 11457] choice_anch_D choice_anch_D RVT-GII KOG0274 KOG4283 PRK09692 PRK09692 Feature: gene Location: 5649-7862 bp Feature: domain Description: choice_anch_D Location: 7185-7491 bp Feature: domain Description: choice_anch_D Location: 7185-7491 bp Feature: domain Description: choice_anch_D Location: 7500-7824 bp Feature: domain Description: choice_anch_D Location: 7500-782 4 bp Feature: gene Location: 8420-8692 bp Feature: gene Location: 8835-9800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9123-9678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912 3-9678 bp Feature: gene Location: 9728-10429 bp Feature: domain Description: KOG0274 Location: 9737-10241 bp Feature: domain Description: KOG02 74 Location: 9737-102 41 bp Feature: domain Description: KOG4283 Location: 10262-10367 bp Feature: domain Description: KOG42 83 Location: 102 62 -10367 bp Feature: gene Location: 10483-11457 bp Feature: domain Description: PRK09692 Location: 10570-11017 bp Feature: domain Description: PRK09692 Location: 10570-11017 bp Feature: domain Description: PRK09692 Location: 11041-11398 bp Feature: domain Description: PRK09692 Location: 11041-11398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), choice_anch_D (NF012200), RVT-GII, KOG0274 (KOG0274, Cdc4 and related F-box and WD-40 proteins ), KOG4283 (KOG4283, Transcription-coupled repair protein CSA, contains WD40 domain )

Seq: PNBF01000429.1 Acidobacteriaceae bacterium isolate palsa_250 73.20111000_P3D.50_contig_2194, whole genome shotgun sequence (6807 bp)
Overview 1 RT 1: 3-1608 bp Neighborhood of RT #1 [3, 1608] RVT-GII Feature: gene Location: 3-929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300-903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 00-903 bp Feature: gene Location: 1025-1177 bp Feature: gene Location: 1396-1608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PNBF01000151.1 Acidobacteriaceae bacterium isolate palsa_250 73.20111000_P3D.50_contig_32205, whole genome shotgun sequence (5377 bp)
Overview 1 RT 1: 3-3435 bp Neighborhood of RT #1 [3, 3596] RVT-Retrons FieF DUF4143 Feature: gene Location: 3-518 bp Feature: gene Location: 535-1581 bp Feature: gene Location: 1629-2540 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1776-2292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1776-2292 bp Feature: gene Location: 2592-3167 bp Feature: domain Description: FieF Location: 2946-3117 bp Feature: domain Description: FieF Location: 294 6-3117 bp Feature: gene Location: 3282-3596 bp Feature: domain Description: DUF4143 Location: 3285-3435 bp Feature: domain Description: DUF4 14 3 Location: 3285-34 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FieF (COG0053), DUF4143 (pfam13635)

Seq: PNBF01000594.1 Acidobacteriaceae bacterium isolate palsa_250 73.20111000_P3D.50_contig_37385, whole genome shotgun sequence (6095 bp)
Overview 1 RT 1: 3892-5727 bp Neighborhood of RT #1 [3892, 5735] TrwC DDE_Tnp_1_4 RVT-GII Feature: gene Location: 3892-4368 bp Feature: domain Description: TrwC Location: 3925-4309 bp Feature: domain Description: TrwC Location: 3925 -4309 bp Feature: gene Location: 4504-5175 bp Feature: domain Description: DDE_Tnp_1_4 Location: 4510-5158 bp Feature: domain Description: DDE_Tnp_1_4 Location: 45 10-5 15 8 bp Feature: gene Location: 5205-5735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5409-5727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 409-5 727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrwC (pfam08751), DDE_Tnp_1_4 (pfam13701), RVT-GII