myRT

myRT report for GCA_003135955.1_20110700_S2D

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Seq: PNBK01000102.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_10880, whole genome shotgun sequence (6985 bp)
Overview 1 RT 1: 4715-6984 bp Neighborhood of RT #1 [4715, 6983] YbcV YbcV MarR RVT-GII Feature: gene Location: 4715-5110 bp Feature: domain Description: YbcV Location: 4724-4877 bp Feature: domain Description: YbcV Location: 4724-4877 bp Feature: domain Description: YbcV Location: 4910-5102 bp Feature: domain Description: YbcV Location: 491 0-51 02 bp Feature: gene Location: 5121-5594 bp Feature: domain Description: MarR Location: 5226-5559 bp Feature: domain Description: MarR Location: 5226-5559 bp Feature: gene Location: 6324-6983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6609-6984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6609-6984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbcV (COG5562), MarR (pfam01047), RVT-GII

Seq: PNBK01000237.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_12884, whole genome shotgun sequence (19351 bp)
Overview 1 RT 1: 3-2496 bp Neighborhood of RT #1 [3, 2561] RVT-GII GIIM HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 3-215 bp Feature: gene Location: 299-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 -12 47 bp Feature: domain Description: GIIM Note: maturase Location: 1304-1508 bp Feature: domain Description: GIIM Note: maturase Location: 1304-1508 bp Feature: gene Location: 1816-2151 bp Feature: domain Description: HTH_Tnp_1 Location: 1876-1978 bp Feature: domain Description: HTH_Tnp_1 Location: 1876-1978 bp Feature: gene Location: 2148-2561 bp Feature: domain Description: TnpB_IS66 Location: 2199-2496 bp Feature: domain Description: TnpB_IS66 Location: 2 199-2 496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: PNBK01000510.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_13338, whole genome shotgun sequence (6907 bp)
Overview 1 RT 1: 4934-6619 bp Neighborhood of RT #1 [4934, 6831] RVT_N RVT-GII GIIM Feature: gene Location: 4934-5071 bp Feature: gene Location: 5135-5335 bp Feature: gene Location: 5347-6831 bp Feature: domain Description: RVT_N Location: 5398-5641 bp Feature: domain Description: RVT_N Location: 53 98-5641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-63 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 6388-6619 bp Feature: domain Description: GIIM Note: maturase Location: 63 88-6619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PNBK01000348.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_17552, whole genome shotgun sequence (3161 bp)
Overview 1 RT 1: 1-1642 bp Neighborhood of RT #1 [1, 1642] RVT-GII group_II_RT_mat Feature: gene Location: 1-891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190-799 bp Feature: gene Location: 689-1279 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 785-1145 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 785-114 5 bp Feature: gene Location: 1352-1642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: PNBK01000230.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_2291, whole genome shotgun sequence (11359 bp)
Overview 1 RT 1: 9016-11049 bp Neighborhood of RT #1 [9016, 11285] RVT-Retrons Feature: gene Location: 9016-9240 bp Feature: gene Location: 9801-10016 bp Feature: gene Location: 10347-11285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10515-11049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105 15 -11049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PNBK01000012.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_38630, whole genome shotgun sequence (5193 bp)
Overview 1 RT 1: 547-3329 bp Neighborhood of RT #1 [547, 3329] AbiTii RVT-Retrons HTH_XRE Feature: gene Location: 547-855 bp Feature: gene Location: 852-1778 bp Feature: domain Description: AbiTii Location: 858-1395 bp Feature: domain Description: AbiTii Location: 858-1395 bp Feature: gene Location: 1801-2766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1996-2524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1996 -2524 bp Feature: gene Location: 2720-3055 bp Feature: domain Description: HTH_XRE Location: 2735-2894 bp Feature: domain Description: HTH_XRE Location: 2735-2894 bp Feature: gene Location: 3120-3329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiTii (pfam18864), RVT-Retrons, HTH_XRE (smart00530)

Seq: PNBK01000037.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_46018, whole genome shotgun sequence (6920 bp)
Overview 1 RT 1: 4553-6578 bp Neighborhood of RT #1 [4553, 6706] HipB RVT-Retrons DNA_polB_like1_exo Feature: gene Location: 4553-4807 bp Feature: gene Location: 4838-5149 bp Feature: domain Description: HipB Location: 4847-5051 bp Feature: domain Description: HipB Location: 4847 -5051 bp Feature: gene Location: 5133-6038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5274-5796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 527 4-57 96 bp Feature: gene Location: 6035-6706 bp Feature: domain Description: DNA_polB_like1_exo Location: 6083-6578 bp Feature: domain Description: DNA_polB_like1_exo Location: 6083-657 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-Retrons, DNA_polB_like1_exo (cd05782)

Seq: PNBK01000157.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_6741, whole genome shotgun sequence (21619 bp)
Overview 1 RT 1: 3-6581 bp Neighborhood of RT #1 [3, 6581] ADOP RVT-GII Pro-peptidase_S53 Peptidases_S53 Big_3_5 Big_3_5 Big_3_5 Feature: gene Location: 3-863 bp Feature: domain Description: ADOP Location: 15-789 bp Feature: domain Description: ADOP Location: 15-78 9 bp Feature: gene Location: 1141-1521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1405-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1405-1498 bp Feature: gene Location: 1767-5528 bp Feature: domain Description: Pro-peptidase_S53 Location: 2133-2496 bp Feature: domain Description: Pro-peptidase_S53 Location: 2133-2496 bp Feature: domain Description: Peptidases_S53 Location: 2589-3951 bp Feature: domain Description: Peptidases_S53 Location: 258 9-3951 bp Feature: domain Description: Big_3_5 Location: 4032-4329 bp Feature: domain Description: Big_3_5 Location: 4032-4329 bp Feature: domain Description: Big_3_5 Location: 4362-4644 bp Feature: domain Description: Big_3_5 Location: 4362-4644 bp Feature: domain Description: Big_3_5 Location: 4737-4968 bp Feature: domain Description: Big_3_5 Location: 4737-4968 bp Feature: gene Location: 5967-6581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, Pro-peptidase_S53 (cl07889), Peptidases_S53 (cd04056), Big_3_5 (pfam16640)

Seq: PNBK01000028.1 Acidobacteriaceae bacterium isolate bog_156 73.20110700_S2D.16_contig_7177, whole genome shotgun sequence (18354 bp)
Overview 1 RT 1: 1-3153 bp Neighborhood of RT #1 [1, 3845] RVT-GII GT4_mannosyltransferase-like CarboxypepD_reg Feature: gene Location: 1-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 6-89 8 bp Feature: gene Location: 1286-2623 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1418-2528 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1418-2528 bp Feature: gene Location: 2751-3845 bp Feature: domain Description: CarboxypepD_reg Location: 2925-3153 bp Feature: domain Description: CarboxypepD_reg Location: 29 25-3153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GT4_mannosyltransferase-like (cd03822), CarboxypepD_reg (pfam13620)