myRT

myRT report for GCA_003136315.1_20111000_P1S

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Seq: PLDW01000091.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_100, whole genome shotgun sequence (95911 bp)
Overview 1 RT 1: 37825-42915 bp Neighborhood of RT #1 [37825, 42915] pfam00656 YfmG RVT-DGRs Feature: gene Location: 37825-39021 bp Feature: gene Location: 39236-41047 bp Feature: domain Description: pfam00656 Location: 39341-39911 bp Feature: domain Description: pfam00656 Location: 39341 -3991 1 bp Feature: domain Description: YfmG Location: 40109-41039 bp Feature: domain Description: YfmG Location: 401 09-41 039 bp Feature: gene Location: 41051-42238 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41288-41930 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 288-41 930 bp Feature: gene Location: 42286-42564 bp Feature: gene Location: 42694-42915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam00656 (Peptidase_C14;Caspase domain), YfmG (COG1262), RVT-DGRs

Seq: PLDW01000242.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_101, whole genome shotgun sequence (43598 bp)
Overview 1 RT 1: 30402-34241 bp Neighborhood of RT #1 [30402, 34241] Aes RVT-Retrons HTH_XRE Feature: gene Location: 30402-31286 bp Feature: domain Description: Aes Location: 30489-30906 bp Feature: domain Description: Aes Location: 30489-30906 bp Feature: gene Location: 30813-31610 bp Feature: gene Location: 32640-33644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32766-33297 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 766-332 97 bp Feature: gene Location: 33649-33957 bp Feature: domain Description: HTH_XRE Location: 33667-33823 bp Feature: domain Description: HTH_XRE Location: 33667-3382 3 bp Feature: gene Location: 33990-34241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), RVT-Retrons, HTH_XRE (smart00530)

Seq: PLDW01000323.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_183, whole genome shotgun sequence (146427 bp)
Overview 1 RT 1: 1869-8833 bp Neighborhood of RT #1 [1869, 8919] CoA_transf_3 CoA_transf_3 STKc_PknB_like pfam03781 RVT-DGRs Avd_like ASCH_ASC-1_like Feature: gene Location: 1869-2576 bp Feature: domain Description: CoA_transf_3 Location: 1881-1962 bp Feature: domain Description: CoA_transf_3 Location: 1881-1962 bp Feature: domain Description: CoA_transf_3 Location: 2088-2325 bp Feature: domain Description: CoA_transf_3 Location: 2088-23 25 bp Feature: gene Location: 2638-6378 bp Feature: domain Description: STKc_PknB_like Location: 3148-3922 bp Feature: domain Description: STKc_PknB_like Location: 3 148-3 922 bp Feature: domain Description: pfam03781 Location: 5629-6355 bp Feature: domain Description: pfam03 781 Location: 5629-63 55 bp Feature: gene Location: 6557-7645 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6764-7406 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6764-7406 bp Feature: gene Location: 7826-8314 bp Feature: domain Description: Avd_like Location: 8009-8309 bp Feature: domain Description: Avd_like Location: 8009-83 09 bp Feature: gene Location: 8503-8919 bp Feature: domain Description: ASCH_ASC-1_like Location: 8506-8833 bp Feature: domain Description: ASCH_ASC-1_like Location: 8506-883 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoA_transf_3 (pfam02515), STKc_PknB_like (cd14014), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376), ASCH_ASC-1_like (cd06554)

Seq: PLDW01000408.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_2236, whole genome shotgun sequence (30798 bp)
Overview 1 RT 1: 45-5680 bp Neighborhood of RT #1 [45, 6105] RVT-GII GIIM CHAT AAA_16 TPR TPR Feature: gene Location: 45-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399-1023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399-1023 bp Feature: domain Description: GIIM Note: maturase Location: 1080-1293 bp Feature: domain Description: GIIM Note: maturase Location: 1080-1293 bp Feature: gene Location: 2144-2596 bp Feature: gene Location: 2626-6105 bp Feature: domain Description: CHAT Location: 2962-3610 bp Feature: domain Description: CHAT Location: 2962-3610 bp Feature: domain Description: AAA_16 Location: 3805-4261 bp Feature: domain Description: AAA_16 Location: 3805-4 261 bp Feature: domain Description: TPR Location: 5110-5314 bp Feature: domain Description: TPR Location: 5110-5314 bp Feature: domain Description: TPR Location: 5362-5680 bp Feature: domain Description: TPR Location: 5362-5680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHAT (pfam12770), AAA_16 (pfam13191), TPR (smart00028), RVT-GII, GIIM (pfam08388)

Seq: PLDW01000512.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_2463, whole genome shotgun sequence (51381 bp)
Overview 1 RT 1: 6770-18988 bp Neighborhood of RT #1 [6770, 19038] degP_htrA_DO DegQ DegQ DegQ RVT-Retrons SWIM WD40 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 6770-7738 bp Feature: domain Description: degP_htrA_DO Location: 6950-7727 bp Feature: domain Description: degP_htrA_DO Location: 695 0-7727 bp Feature: gene Location: 7814-8899 bp Feature: domain Description: DegQ Location: 7934-8285 bp Feature: domain Description: DegQ Location: 7934-8285 bp Feature: domain Description: DegQ Location: 8315-8585 bp Feature: domain Description: DegQ Location: 8315 -85 85 bp Feature: domain Description: DegQ Location: 8648-8822 bp Feature: domain Description: DegQ Location: 8648-8822 bp Feature: gene Location: 9033-10337 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9489-10110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9489-10110 bp Feature: gene Location: 10485-12350 bp Feature: domain Description: SWIM Location: 11934-12075 bp Feature: domain Description: SWIM Location: 11934-12075 bp Feature: gene Location: 12337-19038 bp Feature: domain Description: WD40 Location: 12988-13222 bp Feature: domain Description: WD40 Location: 12988-13222 bp Feature: domain Description: HEAT_2 Location: 13573-13813 bp Feature: domain Description: HEAT_2 Location: 135 73-13813 bp Feature: domain Description: HEAT Location: 13870-14032 bp Feature: domain Description: HEAT Location: 13870-14032 bp Feature: domain Description: HEAT_2 Location: 14395-14608 bp Feature: domain Description: HEAT_2 Location: 14395 -14608 bp Feature: domain Description: HEAT_2 Location: 14872-14998 bp Feature: domain Description: HEAT_2 Location: 14872-14998 bp Feature: domain Description: HEAT_2 Location: 15031-15190 bp Feature: domain Description: HEAT_2 Location: 15 031-15 190 bp Feature: domain Description: HEAT_2 Location: 15208-15340 bp Feature: domain Description: HEAT_2 Location: 15 208-15 340 bp Feature: domain Description: HEAT_2 Location: 15367-15583 bp Feature: domain Description: HEAT_2 Location: 15 367-15 5 83 bp Feature: domain Description: HEAT_2 Location: 16282-16414 bp Feature: domain Description: HEAT_2 Location: 16282-16414 bp Feature: domain Description: HEAT_2 Location: 16603-16843 bp Feature: domain Description: HEAT_2 Location: 16603-16843 bp Feature: domain Description: HEAT_2 Location: 17347-17605 bp Feature: domain Description: HEAT_2 Location: 17347-17605 bp Feature: domain Description: HEAT_2 Location: 17647-17893 bp Feature: domain Description: HEAT_2 Location: 17647-17893 bp Feature: domain Description: HEAT_2 Location: 18487-18682 bp Feature: domain Description: HEAT_2 Location: 18487-18682 bp Feature: domain Description: HEAT_2 Location: 18820-18988 bp Feature: domain Description: HEAT_2 Location: 18820-18988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), degP_htrA_DO (TIGR02037), DegQ (pfam08181), RVT-Retrons

Seq: PLDW01000143.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_256, whole genome shotgun sequence (86048 bp)
Overview 1 RT 1: 42055-51471 bp Neighborhood of RT #1 [42055, 51656] PinE Zn_ribbon_recom DUF2924 RVT-GII Intron_maturas2 HNHc GAF_2 GAF_2 Peptidases_S8_7 Feature: gene Location: 42055-43503 bp Feature: domain Description: PinE Location: 42079-42625 bp Feature: domain Description: PinE Location: 42079-426 25 bp Feature: domain Description: Zn_ribbon_recom Location: 42829-43012 bp Feature: domain Description: Zn_ribbon_recom Location: 42829-43012 bp Feature: gene Location: 43653-44177 bp Feature: domain Description: DUF2924 Location: 43695-44154 bp Feature: domain Description: DUF2924 Location: 436 95-44154 bp Feature: gene Location: 45803-47665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46115-46910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 115-46 910 bp Feature: domain Description: Intron_maturas2 Location: 47015-47249 bp Feature: domain Description: Intron_maturas2 Location: 47015-47249 bp Feature: domain Description: HNHc Note: nucleases Location: 47408-47597 bp Feature: domain Description: HNHc Note: nucleases Location: 47408-47597 bp Feature: gene Location: 48097-50595 bp Feature: domain Description: GAF_2 Location: 49606-49888 bp Feature: domain Description: GAF_2 Location: 496 06 -49888 bp Feature: domain Description: GAF_2 Location: 50089-50383 bp Feature: domain Description: GAF_2 Location: 50089-50383 bp Feature: gene Location: 50712-51656 bp Feature: domain Description: Peptidases_S8_7 Location: 50766-51471 bp Feature: domain Description: Peptidases_S8_7 Location: 5076 6 -51471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), DUF2924 (pfam11149), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GAF_2 (pfam13185), Peptidases_S8_7 (cd07491)

Seq: PLDW01000043.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_2835, whole genome shotgun sequence (22076 bp)
Overview 1 RT 1: 461-2921 bp Neighborhood of RT #1 [461, 2921] RVT-GII GIIM Feature: gene Location: 461-1804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-1445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-1445 bp Feature: domain Description: GIIM Note: maturase Location: 1487-1703 bp Feature: domain Description: GIIM Note: maturase Location: 1487 -17 03 bp Feature: gene Location: 1633-2301 bp Feature: gene Location: 2298-2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLDW01000492.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_329, whole genome shotgun sequence (80003 bp)
Overview 1 RT 1: 2338-7601 bp Neighborhood of RT #1 [2338, 7636] RVT-DGRs NACHT YfmG Feature: gene Location: 2338-2481 bp Feature: gene Location: 2525-3058 bp Feature: gene Location: 3360-4400 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3567-4158 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3567-4158 bp Feature: gene Location: 4399-4701 bp Feature: gene Location: 5078-7636 bp Feature: domain Description: NACHT Location: 5306-5756 bp Feature: domain Description: NACHT Location: 5306-5756 bp Feature: domain Description: YfmG Location: 6839-7601 bp Feature: domain Description: YfmG Location: 68 39-7601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, NACHT (pfam05729), YfmG (COG1262)

Seq: PLDW01000196.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_469, whole genome shotgun sequence (21331 bp)
Overview 1 RT 1: 832-6460 bp Neighborhood of RT #1 [832, 6465] STKc_PknB_like FGE-sulfatase RVT-DGRs Avd_like Feature: gene Location: 832-4527 bp Feature: domain Description: STKc_PknB_like Location: 1228-2002 bp Feature: domain Description: STKc_PknB_like Location: 1228-2002 bp Feature: domain Description: FGE-sulfatase Location: 3775-4513 bp Feature: domain Description: FGE-sulfatase Location: 3775-4513 bp Feature: gene Location: 4708-5796 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4915-5557 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49 15-5557 bp Feature: gene Location: 5928-6134 bp Feature: gene Location: 6133-6465 bp Feature: domain Description: Avd_like Location: 6160-6460 bp Feature: domain Description: Avd_like Location: 6160-6460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781)

Seq: PLDW01000064.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_4904, whole genome shotgun sequence (54377 bp)
Overview 1 RT 1: 4046-14209 bp 2 RT 2: 25303-33060 bp Neighborhood of RT #1 [4046, 14223] RVT-Retrons STKc_PknB_like TPR TPR TPR Sig-70_plancto1 Neighborhood of RT #2 [25303, 33060] STKc_PknB_like KOG4626 TPR_11 TPR RVT-Retrons pfam03781 Feature: gene Location: 4046-5806 bp Feature: gene Location: 5985-7769 bp Feature: gene Location: 8621-10240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9392-10004 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9392-10 004 bp Feature: gene Location: 10793-13615 bp Feature: domain Description: STKc_PknB_like Location: 11057-11849 bp Feature: domain Description: STKc_PknB_like Location: 110 57-11849 bp Feature: domain Description: TPR Location: 12155-12479 bp Feature: domain Description: TPR Location: 12155-12479 bp Feature: domain Description: TPR Location: 12551-12914 bp Feature: domain Description: TPR Location: 12551-12914 bp Feature: domain Description: TPR Location: 13289-13532 bp Feature: domain Description: TPR Location: 13289-13532 bp Feature: gene Location: 13612-14223 bp Feature: domain Description: Sig-70_plancto1 Location: 13657-14209 bp Feature: domain Description: Sig-70_plancto1 Location: 13657-14209 bp Feature: gene Location: 25303-29292 bp Feature: domain Description: STKc_PknB_like Location: 25717-26539 bp Feature: domain Description: STKc_PknB_like Location: 25717-26539 bp Feature: domain Description: KOG4626 Location: 27481-28327 bp Feature: domain Description: KOG4626 Location: 27481-28327 bp Feature: domain Description: TPR_11 Location: 28351-28474 bp Feature: domain Description: TPR_11 Location: 28351-28474 bp Feature: domain Description: TPR Location: 28540-28819 bp Feature: domain Description: TPR Location: 28540-28819 bp Feature: gene Location: 29308-29727 bp Feature: gene Location: 29854-31389 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30481-31105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30481-3110 5 bp Feature: gene Location: 31386-32402 bp Feature: domain Description: pfam03781 Location: 31668-32349 bp Feature: domain Description: pfam03781 Location: 31668-32349 bp Feature: gene Location: 32833-33060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), TPR (smart00028), RVT-Retrons, KOG4626 (KOG4626, O-linked N-acetylglucosamine transferase OGT ), TPR_11 (pfam13414), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: PLDW01000088.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_496, whole genome shotgun sequence (94722 bp)
Overview 1 RT 1: 17302-21803 bp Neighborhood of RT #1 [17302, 21820] DUF3050 RVT-Retrons PGM_like4 Feature: gene Location: 17302-18120 bp Feature: domain Description: DUF3050 Location: 17377-18070 bp Feature: domain Description: DUF3050 Location: 17377-18070 bp Feature: gene Location: 18377-18616 bp Feature: gene Location: 18916-20184 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19531-20167 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19531-20167 bp Feature: gene Location: 20226-20465 bp Feature: gene Location: 20471-21820 bp Feature: domain Description: PGM_like4 Location: 20498-21803 bp Feature: domain Description: PGM_like4 Location: 20498-21803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3050 (pfam11251), RVT-Retrons, PGM_like4 (cd05803)

Seq: PLDW01000240.1 Gemmataceae bacterium isolate palsa_1347 73.20111000_P1S.15_contig_5548, whole genome shotgun sequence (19400 bp)
Overview 1 RT 1: 6982-10760 bp Neighborhood of RT #1 [6982, 10760] TPR TPR_11 TPR RVT_N RVT-GII GIIM HNHc Feature: gene Location: 6982-7662 bp Feature: domain Description: TPR Location: 7126-7324 bp Feature: domain Description: TPR Location: 712 6-7324 bp Feature: domain Description: TPR_11 Location: 7324-7405 bp Feature: domain Description: TPR_11 Location: 7324-7405 bp Feature: domain Description: TPR Location: 7444-7630 bp Feature: domain Description: TPR Location: 7444-7630 bp Feature: gene Location: 7737-8120 bp Feature: gene Location: 8463-10130 bp Feature: RT Description: RVT_N Location: 8517-8730 bp Feature: RT Description: RVT_N Location: 8517-8730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8802-9435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8802-9435 bp Feature: domain Description: GIIM Note: maturase Location: 9492-9726 bp Feature: domain Description: GIIM Note: maturase Location: 9492-9726 bp Feature: domain Description: HNHc Note: nucleases Location: 9954-10113 bp Feature: domain Description: HNHc Note: nucleases Location: 9954-10113 bp Feature: gene Location: 10172-10480 bp Feature: gene Location: 10539-10760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_11 (pfam13414), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)