myRT

myRT report for GCA_003136335.1_20111000_P1M

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Seq: PLEA01000415.1 Acidobacteriaceae bacterium isolate palsa_237 73.20111000_P1M.23_contig_10783, whole genome shotgun sequence (5394 bp)
Overview 1 RT 1: 2508-5392 bp Neighborhood of RT #1 [2508, 5392] IS5 RVT-GII GIIM Feature: gene Location: 2508-2957 bp Feature: gene Location: 3238-3723 bp Feature: domain Description: IS5 Location: 3286-3694 bp Feature: domain Description: IS5 Location: 3286-3694 bp Feature: gene Location: 3666-4838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3870-4527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3870-4527 bp Feature: domain Description: GIIM Note: maturase Location: 4605-4812 bp Feature: domain Description: GIIM Note: maturase Location: 4605-481 2 bp Feature: gene Location: 5162-5392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: PLEA01000095.1 Acidobacteriaceae bacterium isolate palsa_237 73.20111000_P1M.23_contig_57986, whole genome shotgun sequence (6630 bp)
Overview 1 RT 1: 1437-6044 bp Neighborhood of RT #1 [1437, 6388] TPR TPR TPR_12 RVT_N RVT-GII GIIM HNH GIIM Feature: gene Location: 1437-1733 bp Feature: gene Location: 1953-3542 bp Feature: domain Description: TPR Location: 2178-2292 bp Feature: domain Description: TPR Location: 2 178-2 2 92 bp Feature: domain Description: TPR Location: 2487-2718 bp Feature: domain Description: TPR Location: 2 487-2 718 bp Feature: domain Description: TPR_12 Location: 3198-3330 bp Feature: domain Description: TPR_12 Location: 3198-3330 bp Feature: gene Location: 3953-5557 bp Feature: domain Description: RVT_N Location: 3956-4148 bp Feature: domain Description: RVT_N Location: 3956-4148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4193-4847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4193-4847 bp Feature: domain Description: GIIM Note: maturase Location: 4901-5135 bp Feature: domain Description: GIIM Note: maturase Location: 4901-5135 bp Feature: domain Description: HNH Note: nucleases Location: 5387-5525 bp Feature: domain Description: HNH Note: nucleases Location: 5387-552 5 bp Feature: gene Location: 5723-6388 bp Feature: domain Description: GIIM Note: maturase Location: 5810-6044 bp Feature: domain Description: GIIM Note: maturase Location: 5810-6044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_12 (pfam13424), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: PLEA01000168.1 Acidobacteriaceae bacterium isolate palsa_237 73.20111000_P1M.23_contig_6477, whole genome shotgun sequence (4511 bp)
Overview 1 RT 1: 3-3866 bp Neighborhood of RT #1 [3, 3866] RVT-GII XynC Feature: gene Location: 3-371 bp Feature: gene Location: 380-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 89-593 bp Feature: gene Location: 1241-2644 bp Feature: domain Description: XynC Location: 1367-2642 bp Feature: domain Description: XynC Location: 13 67-2642 bp Feature: gene Location: 2634-3866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, XynC (COG5520)