myRT

myRT report for GCA_003136475.1_20110800_S3S

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Seq: PLEQ01000012.1 Deltaproteobacteria bacterium isolate bog_1112 73.20110800_S3S.83_contig_116961, whole genome shotgun sequence (4404 bp)
Overview 1 RT 1: 306-3983 bp Neighborhood of RT #1 [306, 4402] Integrase_H2C2 rve CD_CSD RVT-UG11 RT_RNaseH_2 Retrotrans_gag retropepsin_like Feature: gene Location: 306-1859 bp Feature: domain Description: Integrase_H2C2 Location: 525-684 bp Feature: domain Description: Integrase_H2C2 Location: 525-684 bp Feature: domain Description: rve Location: 735-1074 bp Feature: domain Description: rve Location: 735-1 074 bp Feature: domain Description: CD_CSD Location: 1629-1773 bp Feature: domain Description: CD_CSD Location: 1 629-1 773 bp Feature: gene Location: 2049-2954 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2283-2445 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2283-2445 bp Feature: domain Description: RT_RNaseH_2 Location: 2652-2940 bp Feature: domain Description: RT_RNaseH_2 Location: 2652-2940 bp Feature: gene Location: 2975-4402 bp Feature: domain Description: Retrotrans_gag Location: 3002-3275 bp Feature: domain Description: Retrotrans_gag Location: 3002-3275 bp Feature: domain Description: retropepsin_like Location: 3728-3983 bp Feature: domain Description: retropepsin_like Location: 3728-3983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_H2C2 (pfam17921), rve (pfam00665), CD_CSD (cl28914), RVT-UG11, RT_RNaseH_2 (pfam17919), Retrotrans_gag (pfam03732), retropepsin_like (cd00303)

Seq: PLEQ01000147.1 Deltaproteobacteria bacterium isolate bog_1112 73.20110800_S3S.83_contig_31787, whole genome shotgun sequence (3398 bp)
Overview 1 RT 1: 330-2053 bp Neighborhood of RT #1 [330, 2053] group_II_RT_mat RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 330-608 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 336-513 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 336-513 bp Feature: gene Location: 692-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-944 bp Feature: gene Location: 1030-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036-12 34 bp Feature: gene Location: 1317-1685 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1485-1635 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1485-1635 bp Feature: gene Location: 1685-2053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: PLEQ01000476.1 Deltaproteobacteria bacterium isolate bog_1112 73.20110800_S3S.83_contig_369763, whole genome shotgun sequence (4345 bp)
Overview 1 RT 1: 1331-4242 bp Neighborhood of RT #1 [1331, 4242] AbrB COG1569 RVT-GII Feature: gene Location: 1331-1600 bp Feature: domain Description: AbrB Location: 1343-1580 bp Feature: domain Description: AbrB Location: 13 43 -1580 bp Feature: gene Location: 1597-2007 bp Feature: domain Description: COG1569 Location: 1600-1999 bp Feature: domain Description: COG1569 Location: 1600-1999 bp Feature: gene Location: 2558-3889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2840-3518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2840-3 518 bp Feature: gene Location: 4054-4242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbrB (pfam05145), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII

Seq: PLEQ01000351.1 Deltaproteobacteria bacterium isolate bog_1112 73.20110800_S3S.83_contig_40161, whole genome shotgun sequence (28327 bp)
Overview 1 RT 1: 97-3311 bp Neighborhood of RT #1 [97, 3382] RVT-GII RVT-GII PurM Feature: gene Location: 97-1176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-796 bp Feature: gene Location: 1794-2123 bp Feature: gene Location: 2282-3382 bp Feature: domain Description: PurM Location: 2450-3311 bp Feature: domain Description: PurM Location: 24 50-3311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PurM (COG0150)

Seq: PLEQ01000180.1 Deltaproteobacteria bacterium isolate bog_1112 73.20110800_S3S.83_contig_57431, whole genome shotgun sequence (9994 bp)
Overview 1 RT 1: 8920-9780 bp Neighborhood of RT #1 [8920, 9992] RVT-GII Feature: gene Location: 8920-9243 bp Feature: gene Location: 9263-9541 bp Feature: gene Location: 9519-9992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9528-9780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 28-9780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII