myRT

myRT report for GCA_003136555.1_20110800_S3S

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Seq: PLEW01000177.1 Planctomycetes bacterium isolate bog_1363 73.20110800_S3S.47_contig_10734, whole genome shotgun sequence (39454 bp)
Overview 1 RT 1: 358-3609 bp Neighborhood of RT #1 [358, 4205] group_II_RT_mat RVT-GII GIIM PRK06526 COG4584 Feature: gene Location: 358-1686 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 529-709 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 529-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 5-1 31 2 bp Feature: domain Description: GIIM Note: maturase Location: 1396-1597 bp Feature: domain Description: GIIM Note: maturase Location: 1 396-1 597 bp Feature: gene Location: 1921-2751 bp Feature: domain Description: PRK06526 Location: 1972-2680 bp Feature: domain Description: PRK06526 Location: 1 972-2680 bp Feature: gene Location: 2748-4205 bp Feature: domain Description: COG4584 Location: 3066-3609 bp Feature: domain Description: COG4584 Location: 3066-3609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), COG4584 (Transposase ), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: PLEW01000239.1 Planctomycetes bacterium isolate bog_1363 73.20110800_S3S.47_contig_26638, whole genome shotgun sequence (10920 bp)
Overview 1 RT 1: 4853-10601 bp Neighborhood of RT #1 [4853, 10699] Cytochrome_CBB3 PSD3 CBM60 PSD5 PSD4 PSCyt3 PSD2 HXXSHH RVT-GII GIIM Feature: gene Location: 4853-7297 bp Feature: domain Description: Cytochrome_CBB3 Location: 5051-5252 bp Feature: domain Description: Cytochrome_CBB3 Location: 5051-52 52 bp Feature: domain Description: PSD3 Location: 5303-5477 bp Feature: domain Description: PSD3 Location: 5303-5477 bp Feature: domain Description: CBM60 Location: 5636-5825 bp Feature: domain Description: CBM60 Location: 5636-582 5 bp Feature: domain Description: PSD5 Location: 6059-6236 bp Feature: domain Description: PSD5 Location: 6059-62 36 bp Feature: domain Description: PSD4 Location: 6284-6656 bp Feature: domain Description: PSD4 Location: 62 84-6656 bp Feature: domain Description: PSCyt3 Location: 6713-7010 bp Feature: domain Description: PSCyt3 Location: 6713-7010 bp Feature: domain Description: PSD2 Location: 7067-7274 bp Feature: domain Description: PSD2 Location: 7067-72 74 bp Feature: gene Location: 7311-8762 bp Feature: domain Description: HXXSHH Location: 7440-8478 bp Feature: domain Description: HXXSHH Location: 7440-8478 bp Feature: gene Location: 9449-10699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9647-10334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9647-10334 bp Feature: domain Description: GIIM Note: maturase Location: 10409-10601 bp Feature: domain Description: GIIM Note: maturase Location: 10409-10601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cytochrome_CBB3 (pfam13442), PSD3 (pfam07626), CBM60 (pfam16841), PSD5 (pfam07637), PSD4 (pfam07631), PSCyt3 (pfam07627), PSD2 (pfam07624), HXXSHH (pfam07586), RVT-GII, GIIM (pfam08388)

Seq: PLEW01000041.1 Planctomycetes bacterium isolate bog_1363 73.20110800_S3S.47_contig_75, whole genome shotgun sequence (46867 bp)
Overview 1 RT 1: 28193-36005 bp Neighborhood of RT #1 [28193, 36064] PRK09243 KOG2303 RVT-GII DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 28193-29659 bp Feature: domain Description: PRK09243 Location: 28199-29582 bp Feature: domain Description: PRK09243 Location: 28199-29582 bp Feature: gene Location: 29717-31693 bp Feature: domain Description: KOG2303 Location: 29726-31610 bp Feature: domain Description: KOG23 03 Location: 29726-3 1610 bp Feature: gene Location: 32317-33660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32608-33295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2608-3 3 295 bp Feature: gene Location: 34228-35682 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34834-35638 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 483 4-3 563 8 bp Feature: gene Location: 35738-36064 bp Feature: domain Description: TnpB_IS66 Location: 35741-36005 bp Feature: domain Description: TnpB_IS66 Location: 3 5741-3 6005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09243 (nicotinate phosphoribosyltransferase; Validated), KOG2303 (KOG2303, Predicted NAD synthase, contains CN hydrolase domain ), RVT-GII, DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)