myRT

myRT report for GCA_003136815.1_20111000_P2D

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Seq: PLDQ01000401.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_1003, whole genome shotgun sequence (15007 bp)
Overview 1 RT 1: 12673-14712 bp Neighborhood of RT #1 [12673, 14712] RVT-GII GIIM Feature: gene Location: 12673-12984 bp Feature: gene Location: 13004-13165 bp Feature: gene Location: 13317-14561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13521-14178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3521 -1 41 78 bp Feature: domain Description: GIIM Note: maturase Location: 14259-14478 bp Feature: domain Description: GIIM Note: maturase Location: 1 4259-1 4478 bp Feature: gene Location: 14563-14712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLDQ01000070.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_13455, whole genome shotgun sequence (4462 bp)
Overview 1 RT 1: 426-3792 bp Neighborhood of RT #1 [426, 3869] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 426-1781 bp Feature: domain Description: LZ_Tnp_IS66 Location: 501-735 bp Feature: domain Description: LZ_Tnp_IS66 Location: 501-735 bp Feature: domain Description: zf-IS66 Location: 765-897 bp Feature: domain Description: zf-IS66 Location: 765-897 bp Feature: domain Description: DDE_Tnp_IS66 Location: 957-1719 bp Feature: domain Description: DDE_Tnp_IS66 Location: 957-1719 bp Feature: gene Location: 1880-2173 bp Feature: domain Description: TnpB_IS66 Location: 1889-2108 bp Feature: domain Description: TnpB_IS66 Location: 1889-2 108 bp Feature: gene Location: 2277-3029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2337-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 337-2 493 bp Feature: domain Description: GIIM Note: maturase Location: 2547-2778 bp Feature: domain Description: GIIM Note: maturase Location: 2 547-2 778 bp Feature: gene Location: 3147-3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3234-3507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 34-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3579-3792 bp Feature: domain Description: GIIM Note: maturase Location: 3579-3792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: PLDQ01000184.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_15221, whole genome shotgun sequence (4069 bp)
Overview 1 RT 1: 477-4066 bp Neighborhood of RT #1 [477, 4066] PAP2_like_5 RVT-GII Feature: gene Location: 477-1415 bp Feature: domain Description: PAP2_like_5 Location: 1035-1395 bp Feature: domain Description: PAP2_like_5 Location: 103 5-13 95 bp Feature: gene Location: 1745-2488 bp Feature: gene Location: 2674-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692-2908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692-2908 bp Feature: gene Location: 3527-4066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_like_5 (cd03394), RVT-GII

Seq: PLDQ01000859.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_1946, whole genome shotgun sequence (10607 bp)
Overview 1 RT 1: 568-3891 bp Neighborhood of RT #1 [568, 3891] RVT-GII RVT-GII GIIM Feature: gene Location: 568-1866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1516 bp Feature: gene Location: 2040-2777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043-2412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204 3-24 12 bp Feature: domain Description: GIIM Note: maturase Location: 2490-2685 bp Feature: domain Description: GIIM Note: maturase Location: 24 90-2685 bp Feature: gene Location: 3106-3468 bp Feature: gene Location: 3748-3891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLDQ01000124.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_21772, whole genome shotgun sequence (3946 bp)
Overview 1 RT 1: 1403-3749 bp Neighborhood of RT #1 [1403, 3749] INT_Cre_C RVT-GII GIIM Feature: gene Location: 1403-2386 bp Feature: domain Description: INT_Cre_C Location: 1832-2372 bp Feature: domain Description: INT_Cre_C Location: 1832-2372 bp Feature: gene Location: 2412-2567 bp Feature: gene Location: 2817-3491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2820-3096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2820-3096 bp Feature: domain Description: GIIM Note: maturase Location: 3177-3396 bp Feature: domain Description: GIIM Note: maturase Location: 3177-3396 bp Feature: gene Location: 3600-3749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, GIIM (pfam08388)

Seq: PLDQ01000067.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_29337, whole genome shotgun sequence (3288 bp)
Overview 1 RT 1: 981-3104 bp Neighborhood of RT #1 [981, 3193] RVT-GII GIIM Feature: gene Location: 981-1166 bp Feature: gene Location: 1277-1504 bp Feature: gene Location: 1820-3193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2813 bp Feature: domain Description: GIIM Note: maturase Location: 2885-3104 bp Feature: domain Description: GIIM Note: maturase Location: 2885-3104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLDQ01000152.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_31525, whole genome shotgun sequence (3843 bp)
Overview 1 RT 1: 3-2209 bp Neighborhood of RT #1 [3, 2209] PHA02517 RVT-GII GIIM DUF5372 Feature: gene Location: 3-416 bp Feature: domain Description: PHA02517 Location: 69-417 bp Feature: domain Description: PHA02517 Location: 69-417 bp Feature: gene Location: 507-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564-1191 bp Feature: domain Description: GIIM Note: maturase Location: 1275-1479 bp Feature: domain Description: GIIM Note: maturase Location: 127 5-147 9 bp Feature: gene Location: 1607-1819 bp Feature: domain Description: DUF5372 Location: 1613-1796 bp Feature: domain Description: DUF537 2 Location: 1613-17 96 bp Feature: gene Location: 1871-2209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)

Seq: PLDQ01000724.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_35948, whole genome shotgun sequence (4939 bp)
Overview 1 RT 1: 1-1714 bp Neighborhood of RT #1 [1, 1947] RVT-GII COG3547 Transposase_20 Feature: gene Location: 1-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-478 bp Feature: gene Location: 827-1423 bp Feature: domain Description: COG3547 Location: 1025-1388 bp Feature: domain Description: COG3547 Location: 1025-138 8 bp Feature: gene Location: 1408-1947 bp Feature: domain Description: Transposase_20 Location: 1498-1714 bp Feature: domain Description: Transposase_20 Location: 1498 -1714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase ), Transposase_20 (pfam02371)

Seq: PLDQ01000360.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_3726, whole genome shotgun sequence (6180 bp)
Overview 1 RT 1: 2644-6011 bp Neighborhood of RT #1 [2644, 6019] COG4233 DsbD InsE RVT-GII Feature: gene Location: 2644-4698 bp Feature: domain Description: COG4233 Location: 2656-3415 bp Feature: domain Description: COG4233 Location: 2656-3415 bp Feature: domain Description: DsbD Location: 3448-4678 bp Feature: domain Description: DsbD Location: 3448-4678 bp Feature: gene Location: 4943-5245 bp Feature: domain Description: InsE Location: 4946-5219 bp Feature: domain Description: InsE Location: 49 46-5219 bp Feature: gene Location: 5762-6019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5966-6011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59 66-6011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4233 (Thiol-disulfide interchange protein, contains DsbC and DsbD domains ), DsbD (pfam02683), InsE (COG2963), RVT-GII

Seq: PLDQ01000744.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_56616, whole genome shotgun sequence (3132 bp)
Overview 1 RT 1: 1-3091 bp Neighborhood of RT #1 [1, 3129] TPR_12 CHAT RVT-GII RVT-GII Feature: gene Location: 1-1857 bp Feature: domain Description: TPR_12 Location: 4-136 bp Feature: domain Description: TPR_12 Location: 4-136 bp Feature: domain Description: CHAT Location: 814-1852 bp Feature: domain Description: CHAT Location: 814-1852 bp Feature: gene Location: 2028-2618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031-2241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031-2241 bp Feature: gene Location: 2656-3129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2800-3091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2800-3091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), CHAT (pfam12770), RVT-GII

Seq: PLDQ01000076.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_61110, whole genome shotgun sequence (4098 bp)
Overview 1 RT 1: 1563-4083 bp Neighborhood of RT #1 [1563, 4097] RVT-GII Feature: gene Location: 1563-1724 bp Feature: gene Location: 2313-2801 bp Feature: gene Location: 3285-4097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663-4083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663-4083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLDQ01000093.1 Acidobacteriaceae bacterium isolate palsa_239 73.20111000_P2D.13_contig_96, whole genome shotgun sequence (5803 bp)
Overview 1 RT 1: 594-5760 bp Neighborhood of RT #1 [594, 5801] SpoIIE DDE_Tnp_ISAZ013 RVT_N RVT-GII GIIM TnpB_IS66 COG3436 Feature: gene Location: 594-1409 bp Feature: domain Description: SpoIIE Location: 1014-1317 bp Feature: domain Description: SpoIIE Location: 1014-1317 bp Feature: gene Location: 1505-2731 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1802-2720 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1802-2720 bp Feature: gene Location: 3026-4549 bp Feature: domain Description: RVT_N Location: 3077-3320 bp Feature: domain Description: RVT_N Location: 3077-3320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3365-4013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3365-4013 bp Feature: domain Description: GIIM Note: maturase Location: 4064-4298 bp Feature: domain Description: GIIM Note: maturase Location: 4064-4298 bp Feature: gene Location: 4509-4904 bp Feature: domain Description: TnpB_IS66 Location: 4626-4875 bp Feature: domain Description: TnpB_IS66 Location: 4626-4875 bp Feature: gene Location: 4980-5801 bp Feature: domain Description: COG3436 Location: 5283-5760 bp Feature: domain Description: COG3436 Location: 5283-5760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoIIE (pfam07228), DDE_Tnp_ISAZ013 (pfam07592), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), COG3436 (Transposase )