myRT

myRT report for GCA_003138385.1_20110800_S3D

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Seq: PLGB01000539.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_110057, whole genome shotgun sequence (5476 bp)
Overview 1 RT 1: 737-3469 bp Neighborhood of RT #1 [737, 3729] RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 737-2497 bp Feature: RT Description: RVT_N Location: 797-1037 bp Feature: RT Description: RVT_N Location: 797-1 037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094-1754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 094-1 754 bp Feature: domain Description: GIIM Note: maturase Location: 1805-2039 bp Feature: domain Description: GIIM Note: maturase Location: 1 805-2039 bp Feature: gene Location: 2612-3286 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2627-2864 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2627-2864 bp Feature: gene Location: 3307-3729 bp Feature: domain Description: Transposase_20 Location: 3310-3469 bp Feature: domain Description: Transposase_20 Location: 331 0-3469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLGB01000763.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_21057, whole genome shotgun sequence (18052 bp)
Overview 1 RT 1: 11176-17875 bp Neighborhood of RT #1 [11176, 17892] mycofact_glyco Glyco_tranf_GTA_type RVT-GII GH16_laminarinase_like Feature: gene Location: 11176-12474 bp Feature: domain Description: mycofact_glyco Location: 11446-12223 bp Feature: domain Description: mycofact_glyco Location: 11446-12 2 2 3 bp Feature: gene Location: 12471-13505 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 12513-13074 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 12 513-13074 bp Feature: gene Location: 13611-16433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14628-15183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1462 8-15183 bp Feature: gene Location: 16498-16977 bp Feature: gene Location: 17065-17892 bp Feature: domain Description: GH16_laminarinase_like Location: 17206-17875 bp Feature: domain Description: GH16_laminarinase_like Location: 172 06-17875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mycofact_glyco (TIGR03965), Glyco_tranf_GTA_type (cl11394), RVT-GII, GH16_laminarinase_like (cd08023)

Seq: PLGB01000016.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_35926, whole genome shotgun sequence (3033 bp)
Overview 1 RT 1: 601-2875 bp Neighborhood of RT #1 [601, 2886] RVT-GII GIIM PHA02517 Feature: gene Location: 601-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817-1483 bp Feature: domain Description: GIIM Note: maturase Location: 1564-1777 bp Feature: domain Description: GIIM Note: maturase Location: 1564-1777 bp Feature: gene Location: 1975-2886 bp Feature: domain Description: PHA02517 Location: 2074-2875 bp Feature: domain Description: PHA02517 Location: 2074-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PLGB01000018.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_40808, whole genome shotgun sequence (3553 bp)
Overview 1 RT 1: 271-3307 bp Neighborhood of RT #1 [271, 3504] RVT-GII GIIM rve_3 Feature: gene Location: 271-1200 bp Feature: gene Location: 1341-2585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557-2208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557-2208 bp Feature: domain Description: GIIM Note: maturase Location: 2301-2526 bp Feature: domain Description: GIIM Note: maturase Location: 2301-2526 bp Feature: gene Location: 3133-3504 bp Feature: domain Description: rve_3 Location: 3175-3307 bp Feature: domain Description: rve_3 Location: 3175-3307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rve_3 (pfam13683)

Seq: PLGB01000889.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_63762, whole genome shotgun sequence (4852 bp)
Overview 1 RT 1: 194-4031 bp Neighborhood of RT #1 [194, 4399] RVT-GII GIIM RVT-GII Intron_maturas2 Feature: gene Location: 194-520 bp Feature: gene Location: 559-1980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-15 67 bp Feature: domain Description: GIIM Note: maturase Location: 1639-1870 bp Feature: domain Description: GIIM Note: maturase Location: 1639-1870 bp Feature: gene Location: 2624-4399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2885-3680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2885 -3680 bp Feature: domain Description: Intron_maturas2 Location: 3797-4031 bp Feature: domain Description: Intron_maturas2 Location: 3797-4031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), GIIM (pfam08388)

Seq: PLGB01000037.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_82860, whole genome shotgun sequence (2632 bp)
Overview 1 RT 1: 3-2408 bp Neighborhood of RT #1 [3, 2473] RVT-GII GIIM Feature: gene Location: 3-884 bp Feature: gene Location: 1367-2473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1568-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156 8-2225 bp Feature: domain Description: GIIM Note: maturase Location: 2318-2408 bp Feature: domain Description: GIIM Note: maturase Location: 2318-2408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLGB01000319.1 Actinobacteria bacterium isolate bog_582 73.20110800_S3D.57_contig_87358, whole genome shotgun sequence (4797 bp)
Overview 1 RT 1: 102-3685 bp Neighborhood of RT #1 [102, 3714] RVT-GII INT_ICEBs1_C_like HTH_30 Feature: gene Location: 102-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1026 bp Feature: gene Location: 1421-1948 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1685-1820 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1685-1820 bp Feature: gene Location: 2575-3714 bp Feature: domain Description: HTH_30 Location: 3511-3685 bp Feature: domain Description: HTH_30 Location: 3511-3685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_ICEBs1_C_like (cd01189), HTH_30 (pfam13556)