myRT

myRT report for GCA_003138555.1_20110800_S3D

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Seq: PLGL01000055.1 Acidobacteriaceae bacterium isolate bog_219 73.20110800_S3D.22_contig_1243, whole genome shotgun sequence (47667 bp)
Overview 1 RT 1: 41657-47515 bp Neighborhood of RT #1 [41657, 47515] GT87 RVT-GII GIIM RVT-GII Feature: gene Location: 41657-43027 bp Feature: domain Description: GT87 Location: 41975-42677 bp Feature: domain Description: GT87 Location: 41 975-42677 bp Feature: gene Location: 43129-43722 bp Feature: gene Location: 44660-45988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44969-45593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44969-45593 bp Feature: domain Description: GIIM Note: maturase Location: 45692-45902 bp Feature: domain Description: GIIM Note: maturase Location: 45692-45902 bp Feature: gene Location: 45981-46181 bp Feature: gene Location: 46206-47225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46461-47148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46461 -471 48 bp Feature: gene Location: 47267-47515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT87 (pfam09594), RVT-GII, GIIM (pfam08388)

Seq: PLGL01000154.1 Acidobacteriaceae bacterium isolate bog_219 73.20110800_S3D.22_contig_1371, whole genome shotgun sequence (16125 bp)
Overview 1 RT 1: 10919-16114 bp Neighborhood of RT #1 [10919, 16122] RsbU RVT-GII GIIM PvlArgDC PRK10517 Feature: gene Location: 10919-11122 bp Feature: gene Location: 11281-12696 bp Feature: domain Description: RsbU Location: 11944-12676 bp Feature: domain Description: RsbU Location: 11944-12 676 bp Feature: gene Location: 13049-13603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13055-13211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13055-132 11 bp Feature: domain Description: GIIM Note: maturase Location: 13289-13505 bp Feature: domain Description: GIIM Note: maturase Location: 132 89-13505 bp Feature: gene Location: 13852-14469 bp Feature: domain Description: PvlArgDC Location: 13900-14380 bp Feature: domain Description: PvlArgDC Location: 13900-14380 bp Feature: gene Location: 14572-16122 bp Feature: domain Description: PRK10517 Location: 14578-16114 bp Feature: domain Description: PRK10517 Location: 14578-16114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsbU (COG2208), RVT-GII, GIIM (pfam08388), PvlArgDC (pfam01862), PRK10517 (magnesium-transporting P-type ATPase MgtA)

Seq: PLGL01000042.1 Acidobacteriaceae bacterium isolate bog_219 73.20110800_S3D.22_contig_2650, whole genome shotgun sequence (4214 bp)
Overview 1 RT 1: 1285-4212 bp Neighborhood of RT #1 [1285, 4212] GIIM RVT-GII Feature: gene Location: 1285-1482 bp Feature: gene Location: 2022-2486 bp Feature: domain Description: GIIM Note: maturase Location: 2112-2337 bp Feature: domain Description: GIIM Note: maturase Location: 2112-23 3 7 bp Feature: gene Location: 2523-3404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865-3399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865-3 3 99 bp Feature: gene Location: 3465-3878 bp Feature: gene Location: 3883-4212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII

Seq: PLGL01000036.1 Acidobacteriaceae bacterium isolate bog_219 73.20110800_S3D.22_contig_294, whole genome shotgun sequence (9013 bp)
Overview 1 RT 1: 96-9011 bp Neighborhood of RT #1 [96, 9011] RVT-GII GIIM Cyt_bd_oxida_I Cyt_bd_oxida_I Cytochrome_CBB3 Cytochrome_CBB3 RVT-GII RVT-GII Feature: gene Location: 96-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372-996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372-996 bp Feature: domain Description: GIIM Note: maturase Location: 1101-1311 bp Feature: domain Description: GIIM Note: maturase Location: 1101-1311 bp Feature: gene Location: 1393-1551 bp Feature: gene Location: 1657-1908 bp Feature: gene Location: 2206-3324 bp Feature: gene Location: 3346-4845 bp Feature: domain Description: Cyt_bd_oxida_I Location: 3394-3952 bp Feature: domain Description: Cyt_bd_oxida_I Location: 3394 -3952 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4129-4309 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4 129-4 309 bp Feature: domain Description: Cytochrome_CBB3 Location: 4399-4591 bp Feature: domain Description: Cytochrome_CBB3 Location: 4 399-4 591 bp Feature: domain Description: Cytochrome_CBB3 Location: 4636-4828 bp Feature: domain Description: Cytochrome_CBB3 Location: 4 636-4 828 bp Feature: gene Location: 5334-6821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5826-6438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5826-64 38 bp Feature: gene Location: 6960-7232 bp Feature: gene Location: 7469-8791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7724-8417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7724 -84 17 bp Feature: gene Location: 8886-9011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cyt_bd_oxida_I (pfam01654), Cytochrome_CBB3 (pfam13442)

Seq: PLGL01000170.1 Acidobacteriaceae bacterium isolate bog_219 73.20110800_S3D.22_contig_320, whole genome shotgun sequence (51441 bp)
Overview 1 RT 1: 22872-26393 bp Neighborhood of RT #1 [22872, 26407] rSAM_QueE_gams RVT-Retrons Bac_DNA_binding Feature: gene Location: 22872-23555 bp Feature: domain Description: rSAM_QueE_gams Location: 22878-23538 bp Feature: domain Description: rSAM_QueE_gams Location: 22878-235 38 bp Feature: gene Location: 23783-24655 bp Feature: gene Location: 24652-25584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24751-25336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2475 1-25 336 bp Feature: gene Location: 25634-25942 bp Feature: gene Location: 26114-26407 bp Feature: domain Description: Bac_DNA_binding Location: 26129-26393 bp Feature: domain Description: Bac_DNA_binding Location: 26129-26393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_QueE_gams (TIGR04349), RVT-Retrons, Bac_DNA_binding (pfam00216)

Seq: PLGL01000040.1 Acidobacteriaceae bacterium isolate bog_219 73.20110800_S3D.22_contig_608, whole genome shotgun sequence (25994 bp)
Overview 1 RT 1: 48-3851 bp Neighborhood of RT #1 [48, 3851] HTH_17 RVT-GII Feature: gene Location: 48-299 bp Feature: domain Description: HTH_17 Location: 144-285 bp Feature: domain Description: HTH_17 Location: 144-285 bp Feature: gene Location: 487-1638 bp Feature: gene Location: 1748-3223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2162-2852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216 2-2852 bp Feature: gene Location: 2006-3649 bp Feature: gene Location: 3705-3851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII