myRT

myRT report for GCA_003138605.1_20110800_S3D

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Seq: PLGP01000035.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1404 73.20110800_S3D.12_contig_31408, whole genome shotgun sequence (23226 bp)
Overview 1 RT 1: 148-2656 bp Neighborhood of RT #1 [148, 2706] RVT-GII GIIM KdpC Feature: gene Location: 148-279 bp Feature: gene Location: 546-1430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552-906 bp Feature: domain Description: GIIM Note: maturase Location: 966-1194 bp Feature: domain Description: GIIM Note: maturase Location: 966-1 1 94 bp Feature: gene Location: 1466-1636 bp Feature: gene Location: 2083-2706 bp Feature: domain Description: KdpC Location: 2101-2656 bp Feature: domain Description: KdpC Location: 21 01 -2656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)

Seq: PLGP01000235.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1404 73.20110800_S3D.12_contig_43054, whole genome shotgun sequence (5250 bp)
Overview 1 RT 1: 2937-4881 bp Neighborhood of RT #1 [2937, 5117] RVT_N RVT-GII GIIM Feature: gene Location: 2937-3221 bp Feature: gene Location: 3315-3563 bp Feature: gene Location: 3609-5117 bp Feature: RT Description: RVT_N Location: 3660-3903 bp Feature: RT Description: RVT_N Location: 3660-3903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3948-4593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3948-4593 bp Feature: domain Description: GIIM Note: maturase Location: 4650-4881 bp Feature: domain Description: GIIM Note: maturase Location: 4650-4881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLGP01000210.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1404 73.20110800_S3D.12_contig_6192, whole genome shotgun sequence (23809 bp)
Overview 1 RT 1: 18163-20834 bp Neighborhood of RT #1 [18163, 20834] HTH_XRE GIIM RVT_N RVT-GII Feature: gene Location: 18163-18564 bp Feature: domain Description: HTH_XRE Location: 18388-18550 bp Feature: domain Description: HTH_XRE Location: 183 88-18550 bp Feature: gene Location: 18695-19156 bp Feature: domain Description: GIIM Note: maturase Location: 18701-18920 bp Feature: domain Description: GIIM Note: maturase Location: 18701-18920 bp Feature: gene Location: 19132-20049 bp Feature: RT Description: RVT_N Location: 19183-19426 bp Feature: RT Description: RVT_N Location: 19183 -19426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19471-19930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19471-1993 0 bp Feature: gene Location: 20134-20406 bp Feature: gene Location: 20649-20834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), GIIM (pfam08388), RVT_N (pfam13655), RVT-GII