myRT

myRT report for GCA_003138975.1_20110800_S1M

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Seq: PLHQ01000183.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_14183, whole genome shotgun sequence (5652 bp)
Overview 1 RT 1: 3473-5640 bp Neighborhood of RT #1 [3473, 5651] S2P-M50_SpoIVFB_CBS group_II_RT_mat RVT-GII Feature: gene Location: 3473-4393 bp Feature: domain Description: S2P-M50_SpoIVFB_CBS Location: 3512-4124 bp Feature: domain Description: S2P-M50_SpoIVFB_CBS Location: 351 2-41 24 bp Feature: gene Location: 4535-4876 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4544-4745 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4544-4745 bp Feature: gene Location: 5052-5651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5055-5640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5055-5640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_SpoIVFB_CBS (cd06164), group_II_RT_mat (TIGR04416), RVT-GII

Seq: PLHQ01000098.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_19055, whole genome shotgun sequence (18990 bp)
Overview 1 RT 1: 314-3776 bp Neighborhood of RT #1 [314, 3805] RVT_N RVT-GII GIIM HNHc OmpR Feature: gene Location: 314-589 bp Feature: gene Location: 752-2605 bp Feature: domain Description: RVT_N Location: 926-1169 bp Feature: domain Description: RVT_N Location: 92 6-1169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1214-1874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 14-1874 bp Feature: domain Description: GIIM Note: maturase Location: 1928-2162 bp Feature: domain Description: GIIM Note: maturase Location: 192 8-2 162 bp Feature: domain Description: HNHc Note: nucleases Location: 2390-2546 bp Feature: domain Description: HNHc Note: nucleases Location: 2 390-2 546 bp Feature: gene Location: 2738-3043 bp Feature: gene Location: 3254-3805 bp Feature: domain Description: OmpR Location: 3434-3776 bp Feature: domain Description: OmpR Location: 3434-3776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), OmpR (COG0745)

Seq: PLHQ01000091.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_22283, whole genome shotgun sequence (18334 bp)
Overview 1 RT 1: 374-4550 bp Neighborhood of RT #1 [374, 4550] RVT-GII GIIM Beta_helix Feature: gene Location: 374-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659-1301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659-13 01 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1592 bp Feature: domain Description: GIIM Note: maturase Location: 13 73 -1592 bp Feature: gene Location: 2601-3953 bp Feature: domain Description: Beta_helix Location: 2883-3411 bp Feature: domain Description: Beta_helix Location: 2883 -3 411 bp Feature: gene Location: 4371-4550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Beta_helix (pfam13229)

Seq: PLHQ01000184.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_3552, whole genome shotgun sequence (61004 bp)
Overview 1 RT 1: 57479-61001 bp Neighborhood of RT #1 [57479, 61001] DUF4440 TrHb1_N RVT-GII Feature: gene Location: 57479-57958 bp Feature: domain Description: DUF4440 Location: 57608-57923 bp Feature: domain Description: DUF4 4 4 0 Location: 57608-57923 bp Feature: gene Location: 57916-58581 bp Feature: domain Description: TrHb1_N Location: 58243-58570 bp Feature: domain Description: TrHb1_N Location: 5824 3-58570 bp Feature: gene Location: 58774-60201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59167-59857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59167-59857 bp Feature: gene Location: 60353-60601 bp Feature: gene Location: 60861-61001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4440 (pfam14534), TrHb1_N (cd00454), RVT-GII

Seq: PLHQ01000185.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_4307, whole genome shotgun sequence (45533 bp)
Overview 1 RT 1: 119-2431 bp Neighborhood of RT #1 [119, 2469] RVT-GII GIIM Acetyltransf_10 PurN Feature: gene Location: 119-676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125-287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125 -287 bp Feature: domain Description: GIIM Note: maturase Location: 383-593 bp Feature: domain Description: GIIM Note: maturase Location: 383-5 93 bp Feature: gene Location: 683-1384 bp Feature: domain Description: Acetyltransf_10 Location: 1121-1301 bp Feature: domain Description: Acetyltransf_10 Location: 1121-1301 bp Feature: gene Location: 1840-2469 bp Feature: domain Description: PurN Location: 1849-2431 bp Feature: domain Description: PurN Location: 1849-2431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673), PurN (TIGR00639)

Seq: PLHQ01000085.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_53152, whole genome shotgun sequence (5239 bp)
Overview 1 RT 1: 4221-5234 bp Neighborhood of RT #1 [4221, 5236] STKc_PknB_like RVT_N RVT-GII Feature: gene Location: 4221-4556 bp Feature: domain Description: STKc_PknB_like Location: 4359-4476 bp Feature: domain Description: STKc_PknB_like Location: 4359-4476 bp Feature: gene Location: 4591-4728 bp Feature: gene Location: 4976-5236 bp Feature: domain Description: RVT_N Location: 4982-5066 bp Feature: domain Description: RVT_N Location: 4982-506 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5111-5234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5111-5234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT_N (pfam13655), RVT-GII

Seq: PLHQ01000053.1 Acidobacteriaceae bacterium isolate bog_206 73.20110800_S1M.72_contig_6553, whole genome shotgun sequence (30653 bp)
Overview 1 RT 1: 28668-30270 bp Neighborhood of RT #1 [28668, 30650] RVT-GII Feature: gene Location: 28668-29078 bp Feature: gene Location: 29158-29379 bp Feature: gene Location: 29658-30650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29664-30270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29664-3027 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII