myRT

myRT report for GCA_003139835.1_20110800_S2M

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Seq: PLGS01000070.1 Gammaproteobacteria bacterium isolate bog_1199 73.20110800_S2M.47_contig_1910, whole genome shotgun sequence (161138 bp)
Overview 1 RT 1: 129258-139689 bp Neighborhood of RT #1 [129258, 139689] S1-P1_nuclease RVT-UG1 RecD RecD Feature: gene Location: 129258-129485 bp Feature: gene Location: 129498-130460 bp Feature: domain Description: S1-P1_nuclease Location: 129576-130311 bp Feature: domain Description: S1 -P1 _nuclease Location: 1 29576-1 3031 1 bp Feature: gene Location: 131782-135543 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 132382-132880 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 32382-1 32880 bp Feature: gene Location: 135557-139318 bp Feature: domain Description: RecD Location: 137390-137852 bp Feature: domain Description: RecD Location: 1 37390-1 37852 bp Feature: domain Description: RecD Location: 138266-138842 bp Feature: domain Description: RecD Location: 1 38266-1 38842 bp Feature: gene Location: 139315-139689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S1-P1_nuclease (pfam02265), RVT-UG1, RecD (COG0507)

Seq: PLGS01000073.1 Gammaproteobacteria bacterium isolate bog_1199 73.20110800_S2M.47_contig_2621, whole genome shotgun sequence (16571 bp)
Overview 1 RT 1: 9647-14435 bp Neighborhood of RT #1 [9647, 15514] COG4861 COG4861 RVT-GII GIIM HTH_28 rve Feature: gene Location: 9647-10756 bp Feature: domain Description: COG4861 Location: 9947-10325 bp Feature: domain Description: COG4861 Location: 9947-1032 5 bp Feature: domain Description: COG4861 Location: 10334-10532 bp Feature: domain Description: COG4861 Location: 10334-10532 bp Feature: gene Location: 11149-11472 bp Feature: gene Location: 11476-13023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11779-12589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11779-12 589 bp Feature: domain Description: GIIM Note: maturase Location: 12664-12874 bp Feature: domain Description: GIIM Note: maturase Location: 12 664-12 874 bp Feature: gene Location: 13245-13595 bp Feature: domain Description: HTH_28 Location: 13293-13446 bp Feature: domain Description: HTH_2 8 Location: 132 93-13446 bp Feature: gene Location: 13610-15514 bp Feature: domain Description: rve Location: 14105-14435 bp Feature: domain Description: rve Location: 14105-14435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4861 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388), HTH_28 (pfam13518), rve (pfam00665)

Seq: PLGS01000037.1 Gammaproteobacteria bacterium isolate bog_1199 73.20110800_S2M.47_contig_3390, whole genome shotgun sequence (8635 bp)
Overview 1 RT 1: 2594-5099 bp Neighborhood of RT #1 [2594, 5099] DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 2594-2764 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2600-2702 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2600-2702 bp Feature: gene Location: 3125-3439 bp Feature: gene Location: 3605-4117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3608-4106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 608-4106 bp Feature: gene Location: 4435-4908 bp Feature: gene Location: 4962-5099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: PLGS01000054.1 Gammaproteobacteria bacterium isolate bog_1199 73.20110800_S2M.47_contig_561, whole genome shotgun sequence (171651 bp)
Overview 1 RT 1: 161321-165978 bp Neighborhood of RT #1 [161321, 166244] InsE PHA02517 RVT-GII GIIM PHA02517 Recombinase Zn_ribbon_recom Recombinase Feature: gene Location: 161321-161635 bp Feature: domain Description: InsE Location: 161324-161615 bp Feature: domain Description: InsE Location: 161324 -161615 bp Feature: gene Location: 161635-162063 bp Feature: domain Description: PHA02517 Location: 161683-162031 bp Feature: domain Description: PHA02517 Location: 161683-162031 bp Feature: gene Location: 162681-164219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162954-163698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162954 -163698 bp Feature: domain Description: GIIM Note: maturase Location: 163818-163998 bp Feature: domain Description: GIIM Note: maturase Location: 163818-163998 bp Feature: gene Location: 164385-164588 bp Feature: domain Description: PHA02517 Location: 164397-164577 bp Feature: domain Description: PHA02517 Location: 164 397-164 577 bp Feature: gene Location: 164595-166244 bp Feature: domain Description: Recombinase Location: 164751-165099 bp Feature: domain Description: Recombinase Location: 164 751-165099 bp Feature: domain Description: Zn_ribbon_recom Location: 165159-165333 bp Feature: domain Description: Zn_ribbon_recom Location: 165159-165333 bp Feature: domain Description: Recombinase Location: 165846-165978 bp Feature: domain Description: Recombinase Location: 16584 6-165978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: PLGS01000013.1 Gammaproteobacteria bacterium isolate bog_1199 73.20110800_S2M.47_contig_9320, whole genome shotgun sequence (19704 bp)
Overview 1 RT 1: 12680-15748 bp Neighborhood of RT #1 [12680, 15748] RelE YiaG RVT-GII Feature: gene Location: 12680-13087 bp Feature: domain Description: RelE Location: 12704-13055 bp Feature: domain Description: RelE Location: 12704-1305 5 bp Feature: gene Location: 13062-13370 bp Feature: domain Description: YiaG Location: 13068-13365 bp Feature: domain Description: YiaG Location: 13068-13365 bp Feature: gene Location: 13955-15313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14210-14897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14210-14897 bp Feature: gene Location: 15344-15472 bp Feature: gene Location: 15335-15748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), YiaG (COG2944), RVT-GII