myRT

myRT report for GCA_003139995.1_20110800_S1M

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Seq: PLIC01000159.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_12997, whole genome shotgun sequence (17296 bp)
Overview 1 RT 1: 512-5996 bp Neighborhood of RT #1 [512, 6016] PRK10517 PvlArgDC RVT-GII GIIM RsbU Feature: gene Location: 512-2725 bp Feature: domain Description: PRK10517 Location: 527-2717 bp Feature: domain Description: PRK1 051 7 Location: 527-271 7 bp Feature: gene Location: 2828-3445 bp Feature: domain Description: PvlArgDC Location: 2876-3356 bp Feature: domain Description: PvlArgDC Location: 2876-3356 bp Feature: gene Location: 3694-4248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-3856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-3856 bp Feature: domain Description: GIIM Note: maturase Location: 3934-4150 bp Feature: domain Description: GIIM Note: maturase Location: 3934-41 50 bp Feature: gene Location: 4399-4590 bp Feature: gene Location: 4601-6016 bp Feature: domain Description: RsbU Location: 5264-5996 bp Feature: domain Description: RsbU Location: 5264-5996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10517 (magnesium-transporting P-type ATPase MgtA), PvlArgDC (pfam01862), RVT-GII, GIIM (pfam08388), RsbU (COG2208)

Seq: PLIC01000038.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_15684, whole genome shotgun sequence (4646 bp)
Overview 1 RT 1: 3-4056 bp Neighborhood of RT #1 [3, 4643] RVT-GII GIIM PL-6 PL-6 Feature: gene Location: 3-332 bp Feature: gene Location: 337-750 bp Feature: gene Location: 812-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1688 bp Feature: gene Location: 1730-2194 bp Feature: domain Description: GIIM Note: maturase Location: 1820-2045 bp Feature: domain Description: GIIM Note: maturase Location: 182 0-2 045 bp Feature: gene Location: 3168-4643 bp Feature: domain Description: PL-6 Location: 3360-3510 bp Feature: domain Description: PL-6 Location: 3360-3510 bp Feature: domain Description: PL-6 Location: 3735-4056 bp Feature: domain Description: PL-6 Location: 3735-4056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PL-6 (cl19188)

Seq: PLIC01000089.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_15862, whole genome shotgun sequence (6213 bp)
Overview 1 RT 1: 288-6211 bp Neighborhood of RT #1 [288, 6211] RVT-GII RVT-GII Cyt_bd_oxida_I Cyt_bd_oxida_I Cytochrome_CBB3 Cytochrome_CBB3 Feature: gene Location: 288-512 bp Feature: gene Location: 607-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1555 bp Feature: gene Location: 2166-2438 bp Feature: gene Location: 2577-4064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069-3681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 069-3 681 bp Feature: gene Location: 4553-6052 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4601-5159 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4601-5159 bp Feature: domain Description: Cyt_bd_oxida_I Location: 5336-5516 bp Feature: domain Description: Cyt_bd_oxida_I Location: 53 3 6-5516 bp Feature: domain Description: Cytochrome_CBB3 Location: 5606-5798 bp Feature: domain Description: Cytochrome_CBB3 Location: 5606-5798 bp Feature: domain Description: Cytochrome_CBB3 Location: 5843-6035 bp Feature: domain Description: Cytochrome_CBB3 Location: 5843 -603 5 bp Feature: gene Location: 6074-6211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cyt_bd_oxida_I (pfam01654), Cytochrome_CBB3 (pfam13442)

Seq: PLIC01000280.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_15971, whole genome shotgun sequence (4560 bp)
Overview 1 RT 1: 687-4414 bp Neighborhood of RT #1 [687, 4428] RVT-GII HTH_17 Feature: gene Location: 687-974 bp Feature: gene Location: 1300-1656 bp Feature: gene Location: 1649-2728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1667-2357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1667-2357 bp Feature: gene Location: 2838-3989 bp Feature: gene Location: 4177-4428 bp Feature: domain Description: HTH_17 Location: 4273-4414 bp Feature: domain Description: HTH_17 Location: 4 273-4 4 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_17 (pfam12728)

Seq: PLIC01000028.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_18069, whole genome shotgun sequence (3207 bp)
Overview 1 RT 1: 1-3029 bp Neighborhood of RT #1 [1, 3112] RVT-GII GIIM Feature: gene Location: 1-1002 bp Feature: gene Location: 1657-1815 bp Feature: gene Location: 1814-3112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090-2714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090-2714 bp Feature: domain Description: GIIM Note: maturase Location: 2819-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2819-3029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLIC01000007.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_35, whole genome shotgun sequence (60830 bp)
Overview 1 RT 1: 11598-15119 bp Neighborhood of RT #1 [11598, 15133] rSAM_QueE_gams RVT-Retrons Bac_DNA_binding Feature: gene Location: 11598-12281 bp Feature: domain Description: rSAM_QueE_gams Location: 11604-12264 bp Feature: domain Description: rSAM_QueE_gams Location: 116 04-1226 4 bp Feature: gene Location: 12509-13381 bp Feature: gene Location: 13378-14310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13477-14062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13477-1406 2 bp Feature: gene Location: 14360-14668 bp Feature: gene Location: 14840-15133 bp Feature: domain Description: Bac_DNA_binding Location: 14855-15119 bp Feature: domain Description: Bac_DNA_binding Location: 14855-15119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_QueE_gams (TIGR04349), RVT-Retrons, Bac_DNA_binding (pfam00216)

Seq: PLIC01000303.1 Acidobacteriaceae bacterium isolate bog_202 73.20110800_S1M.27_contig_512, whole genome shotgun sequence (47803 bp)
Overview 1 RT 1: 41657-47651 bp Neighborhood of RT #1 [41657, 47651] GT87 RVT-GII GIIM RVT-GII Feature: gene Location: 41657-43027 bp Feature: domain Description: GT87 Location: 41975-42677 bp Feature: domain Description: GT87 Location: 4197 5-4267 7 bp Feature: gene Location: 43129-43722 bp Feature: gene Location: 44796-46124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45105-45729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45105-457 29 bp Feature: domain Description: GIIM Note: maturase Location: 45828-46038 bp Feature: domain Description: GIIM Note: maturase Location: 45828-46038 bp Feature: gene Location: 46117-46317 bp Feature: gene Location: 46342-47361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46597-47284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46597 -47 284 bp Feature: gene Location: 47403-47651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT87 (pfam09594), RVT-GII, GIIM (pfam08388)