myRT

myRT report for GCA_003140035.1_20110800_S1D

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Seq: PLIL01000078.1 Acidobacteriaceae bacterium isolate bog_200 73.20110800_S1D.18_contig_10780, whole genome shotgun sequence (6995 bp)
Overview 1 RT 1: 2-6807 bp Neighborhood of RT #1 [2, 6807] RVT-GII RVT-GII Cyt_bd_oxida_I Cyt_bd_oxida_I Cytochrome_CBB3 Cytochrome_CBB3 Feature: gene Location: 2-127 bp Feature: gene Location: 222-1544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1 1 70 bp Feature: gene Location: 1781-2053 bp Feature: gene Location: 2192-3679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684-3296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684-3296 bp Feature: gene Location: 4168-5667 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4216-4774 bp Feature: domain Description: Cyt_bd_oxida_I Location: 421 6-4774 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4951-5131 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4951 -51 31 bp Feature: domain Description: Cytochrome_CBB3 Location: 5221-5413 bp Feature: domain Description: Cytochrome_CBB3 Location: 5221 -541 3 bp Feature: domain Description: Cytochrome_CBB3 Location: 5458-5650 bp Feature: domain Description: Cytochrome_CBB3 Location: 5458-5650 bp Feature: gene Location: 5689-6807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLIL01000246.1 Acidobacteriaceae bacterium isolate bog_200 73.20110800_S1D.18_contig_180, whole genome shotgun sequence (84236 bp)
Overview 1 RT 1: 79907-84191 bp Neighborhood of RT #1 [79907, 84205] RVT-GII HTH_17 Feature: gene Location: 79907-80359 bp Feature: gene Location: 80417-80704 bp Feature: gene Location: 81030-82505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81444-82134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81444-82 134 bp Feature: gene Location: 82615-83766 bp Feature: gene Location: 83954-84205 bp Feature: domain Description: HTH_17 Location: 84050-84191 bp Feature: domain Description: HTH_17 Location: 84050-84191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_17 (pfam12728)

Seq: PLIL01000219.1 Acidobacteriaceae bacterium isolate bog_200 73.20110800_S1D.18_contig_1844, whole genome shotgun sequence (47059 bp)
Overview 1 RT 1: 18491-22012 bp Neighborhood of RT #1 [18491, 22026] rSAM_QueE_gams RVT-Retrons Bac_DNA_binding Feature: gene Location: 18491-19174 bp Feature: domain Description: rSAM_QueE_gams Location: 18497-19157 bp Feature: domain Description: rSAM_QueE_gams Location: 18497-19157 bp Feature: gene Location: 19402-20274 bp Feature: gene Location: 20271-21203 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20370-20955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 203 70-20955 bp Feature: gene Location: 21253-21561 bp Feature: gene Location: 21733-22026 bp Feature: domain Description: Bac_DNA_binding Location: 21748-22012 bp Feature: domain Description: Bac_DNA_binding Location: 21748-22012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_QueE_gams (TIGR04349), RVT-Retrons, Bac_DNA_binding (pfam00216)

Seq: PLIL01000018.1 Acidobacteriaceae bacterium isolate bog_200 73.20110800_S1D.18_contig_4100, whole genome shotgun sequence (4212 bp)
Overview 1 RT 1: 2-4054 bp Neighborhood of RT #1 [2, 4209] RVT-GII GIIM PL-6 PL-6 Feature: gene Location: 2-331 bp Feature: gene Location: 336-749 bp Feature: gene Location: 810-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152-1683 bp Feature: gene Location: 1728-2192 bp Feature: domain Description: GIIM Note: maturase Location: 1818-2043 bp Feature: domain Description: GIIM Note: maturase Location: 1818-204 3 bp Feature: gene Location: 3166-4209 bp Feature: domain Description: PL-6 Location: 3358-3508 bp Feature: domain Description: PL-6 Location: 3358-3508 bp Feature: domain Description: PL-6 Location: 3733-4054 bp Feature: domain Description: PL-6 Location: 3733-4 054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), PL-6 (cl19188), RVT-GII

Seq: PLIL01000132.1 Acidobacteriaceae bacterium isolate bog_200 73.20110800_S1D.18_contig_938, whole genome shotgun sequence (16607 bp)
Overview 1 RT 1: 814-5308 bp Neighborhood of RT #1 [814, 5328] PRK10517 PvlArgDC RVT-GII GIIM RsbU Feature: gene Location: 814-2037 bp Feature: domain Description: PRK10517 Location: 835-2029 bp Feature: domain Description: PRK105 17 Location: 835 -2029 bp Feature: gene Location: 2140-2757 bp Feature: domain Description: PvlArgDC Location: 2188-2668 bp Feature: domain Description: PvlArgDC Location: 2188-2668 bp Feature: gene Location: 3006-3560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051-3171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305 1-3171 bp Feature: domain Description: GIIM Note: maturase Location: 3246-3462 bp Feature: domain Description: GIIM Note: maturase Location: 3246-3462 bp Feature: gene Location: 3711-3902 bp Feature: gene Location: 3913-5328 bp Feature: domain Description: RsbU Location: 4576-5308 bp Feature: domain Description: RsbU Location: 45 76-5 308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PvlArgDC (pfam01862), RVT-GII, GIIM (pfam08388), RsbU (COG2208), PRK10517 (magnesium-transporting P-type ATPase MgtA)