myRT

myRT report for GCA_003140115.1_20110800_P3S

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Seq: PLIQ01000024.1 Actinobacteria bacterium isolate palsa_558 73.20110800_P3S.4_contig_11812, whole genome shotgun sequence (5617 bp)
Overview 1 RT 1: 67-5233 bp Neighborhood of RT #1 [67, 5616] Trans_reg_C BTAD COG3903 TPR Methyltransf_31 RVT-GII Intron_maturas2 Feature: gene Location: 67-3150 bp Feature: domain Description: Trans_reg_C Location: 277-451 bp Feature: domain Description: Trans_reg_C Location: 277-451 bp Feature: domain Description: BTAD Location: 508-931 bp Feature: domain Description: BTAD Location: 508-931 bp Feature: domain Description: COG3903 Location: 1051-2185 bp Feature: domain Description: COG3903 Location: 1 051 -21 85 bp Feature: domain Description: TPR Location: 2269-2932 bp Feature: domain Description: TPR Location: 2269-2932 bp Feature: gene Location: 3137-4201 bp Feature: domain Description: Methyltransf_31 Location: 3656-3989 bp Feature: domain Description: Methyltransf_31 Location: 3656-3989 bp Feature: gene Location: 4480-5616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4483-4894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4483-4894 bp Feature: domain Description: Intron_maturas2 Location: 5011-5233 bp Feature: domain Description: Intron_maturas2 Location: 501 1 -5233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_31 (pfam13847), RVT-GII, Intron_maturas2 (pfam01348), Trans_reg_C (smart00862), BTAD (smart01043), COG3903 (Predicted ATPase ), TPR (smart00028)

Seq: PLIQ01000330.1 Actinobacteria bacterium isolate palsa_558 73.20110800_P3S.4_contig_456, whole genome shotgun sequence (14416 bp)
Overview 1 RT 1: 6069-10140 bp Neighborhood of RT #1 [6069, 10256] RVT-GII GIIM LanC_like VOC_like Feature: gene Location: 6069-6323 bp Feature: gene Location: 6650-6955 bp Feature: gene Location: 7163-8425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7379-8039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7379-8039 bp Feature: domain Description: GIIM Note: maturase Location: 8117-8348 bp Feature: domain Description: GIIM Note: maturase Location: 8117-8348 bp Feature: gene Location: 9162-9734 bp Feature: domain Description: LanC_like Location: 9171-9663 bp Feature: domain Description: LanC_like Location: 9171-9663 bp Feature: gene Location: 9768-10256 bp Feature: domain Description: VOC_like Location: 9801-10140 bp Feature: domain Description: VOC_like Location: 9801-10140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LanC_like (cl04955), VOC_like (cd16355)

Seq: PLIQ01000039.1 Actinobacteria bacterium isolate palsa_558 73.20110800_P3S.4_contig_8607, whole genome shotgun sequence (2832 bp)
Overview 1 RT 1: 1-2075 bp Neighborhood of RT #1 [1, 2215] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 1-705 bp Feature: domain Description: DDE_Tnp_IS66 Location: 136-634 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13 6-63 4 bp Feature: gene Location: 752-2215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088-1784 bp Feature: domain Description: GIIM Note: maturase Location: 1853-2075 bp Feature: domain Description: GIIM Note: maturase Location: 1853 -2075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)