myRT

myRT report for GCA_003140395.1_20120500_P13

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Seq: PLJV01000323.1 Acidimicrobiaceae bacterium isolate palsa_638 73.20120500_P13.15_contig_26521, whole genome shotgun sequence (7164 bp)
Overview 1 RT 1: 1671-6873 bp Neighborhood of RT #1 [1671, 7034] MdlB PotE RVT-CRISPR-like GIIM DsbA_family Feature: gene Location: 1671-3575 bp Feature: domain Description: MdlB Location: 1770-3543 bp Feature: domain Description: MdlB Location: 1 770-3543 bp Feature: gene Location: 3767-5452 bp Feature: domain Description: PotE Location: 3818-5294 bp Feature: domain Description: PotE Location: 381 8-5294 bp Feature: gene Location: 5742-5891 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5745-5874 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5745-5874 bp Feature: gene Location: 6032-6268 bp Feature: domain Description: GIIM Note: maturase Location: 6035-6152 bp Feature: domain Description: GIIM Note: maturase Location: 6035-61 52 bp Feature: gene Location: 6396-7034 bp Feature: domain Description: DsbA_family Location: 6411-6873 bp Feature: domain Description: DsbA_family Location: 641 1 -6873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), PotE (COG0531), RVT-CRISPR, GIIM (pfam08388), DsbA_family (cd02972)

Seq: PLJV01000089.1 Acidimicrobiaceae bacterium isolate palsa_638 73.20120500_P13.15_contig_39368, whole genome shotgun sequence (4269 bp)
Overview 1 RT 1: 1703-4068 bp Neighborhood of RT #1 [1703, 4199] Tra8 RVT-GII GIIM Feature: gene Location: 1703-1924 bp Feature: domain Description: Tra8 Location: 1757-1913 bp Feature: domain Description: Tra8 Location: 1757-1913 bp Feature: gene Location: 2211-2591 bp Feature: gene Location: 2769-4199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3084-3765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3084-3765 bp Feature: domain Description: GIIM Note: maturase Location: 3843-4068 bp Feature: domain Description: GIIM Note: maturase Location: 3843-4068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388)

Seq: PLJV01000306.1 Acidimicrobiaceae bacterium isolate palsa_638 73.20120500_P13.15_contig_6067, whole genome shotgun sequence (32115 bp)
Overview 1 RT 1: 10399-16517 bp Neighborhood of RT #1 [10399, 16579] AAA_33 RVT-GII GIIM PepP LipB PRK05481 Feature: gene Location: 10399-11313 bp Feature: gene Location: 11310-11735 bp Feature: domain Description: AAA_33 Location: 11346-11703 bp Feature: domain Description: AAA_3 3 Location: 113 46-11703 bp Feature: gene Location: 11840-13180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12158-12785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12158-12785 bp Feature: domain Description: GIIM Note: maturase Location: 12881-13094 bp Feature: domain Description: GIIM Note: maturase Location: 12881-13 094 bp Feature: gene Location: 13761-14906 bp Feature: domain Description: PepP Location: 13812-14877 bp Feature: domain Description: PepP Location: 13 812-14877 bp Feature: gene Location: 14903-16579 bp Feature: domain Description: LipB Location: 14912-15500 bp Feature: domain Description: LipB Location: 14912-15500 bp Feature: domain Description: PRK05481 Location: 15683-16517 bp Feature: domain Description: PRK05481 Location: 15683 -16517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_33 (pfam13671), RVT-GII, GIIM (pfam08388), PepP (COG0006), LipB (COG0321), PRK05481 (lipoyl synthase; Provisional)

Seq: PLJV01000048.1 Acidimicrobiaceae bacterium isolate palsa_638 73.20120500_P13.15_contig_9380, whole genome shotgun sequence (24681 bp)
Overview 1 RT 1: 620-4259 bp Neighborhood of RT #1 [620, 4276] RVT-GII GIIM DUF1330 COG1373 Feature: gene Location: 620-1873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-14 96 bp Feature: domain Description: GIIM Note: maturase Location: 1577-1802 bp Feature: domain Description: GIIM Note: maturase Location: 1577-1802 bp Feature: gene Location: 2434-2727 bp Feature: domain Description: DUF1330 Location: 2443-2722 bp Feature: domain Description: DUF1330 Location: 24 4 3-2722 bp Feature: gene Location: 3152-4276 bp Feature: domain Description: COG1373 Location: 3227-4259 bp Feature: domain Description: COG1373 Location: 3227-4 259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1330 (pfam07045), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388)