myRT

myRT report for GCA_003140725.1_20120800_P2D

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Seq: PLKV01000185.1 Acidobacteriaceae bacterium isolate palsa_420 73.20120800_P2D.6_contig_1288, whole genome shotgun sequence (29738 bp)
Overview 1 RT 1: 14809-19282 bp Neighborhood of RT #1 [14809, 19282] XerC HTH_17 RVT-UG12 Feature: gene Location: 14809-16053 bp Feature: domain Description: XerC Location: 15166-15970 bp Feature: domain Description: XerC Location: 1 51 66-1 5970 bp Feature: gene Location: 16050-16463 bp Feature: domain Description: HTH_17 Location: 16209-16374 bp Feature: domain Description: HTH_1 7 Location: 1 6209-1 6374 bp Feature: gene Location: 16608-18254 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 17019-17439 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 701 9-1 7439 bp Feature: gene Location: 18804-19019 bp Feature: gene Location: 19133-19282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), HTH_17 (pfam12728), RVT-UG12

Seq: PLKV01000181.1 Acidobacteriaceae bacterium isolate palsa_420 73.20120800_P2D.6_contig_2902, whole genome shotgun sequence (17594 bp)
Overview 1 RT 1: 3499-7973 bp Neighborhood of RT #1 [3499, 8041] rpmE DusA RVT-Retrons metallo-hydrolase-like_MBL-fold Feature: gene Location: 3499-3729 bp Feature: domain Description: rpmE Location: 3502-3703 bp Feature: domain Description: rpmE Location: 3502 -3703 bp Feature: gene Location: 3827-5164 bp Feature: domain Description: DusA Location: 3992-5075 bp Feature: domain Description: DusA Location: 3992 -5075 bp Feature: gene Location: 5169-6500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5625-6267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 562 5-62 67 bp Feature: gene Location: 6752-7195 bp Feature: gene Location: 7202-8041 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 7235-7973 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 72 35-7973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpmE (PRK00528), DusA (COG0042), RVT-Retrons, metallo-hydrolase-like_MBL-fold (cl23716)

Seq: PLKV01000061.1 Acidobacteriaceae bacterium isolate palsa_420 73.20120800_P2D.6_contig_4398, whole genome shotgun sequence (4995 bp)
Overview 1 RT 1: 206-3050 bp Neighborhood of RT #1 [206, 3187] RVT-GII PulG Feature: gene Location: 206-1768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701-13 91 bp Feature: gene Location: 2100-2432 bp Feature: gene Location: 2714-3187 bp Feature: domain Description: PulG Location: 2795-3050 bp Feature: domain Description: PulG Location: 2795-3 050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PulG (pfam11773)

Seq: PLKV01000277.1 Acidobacteriaceae bacterium isolate palsa_420 73.20120800_P2D.6_contig_4557, whole genome shotgun sequence (7841 bp)
Overview 1 RT 1: 1-4671 bp Neighborhood of RT #1 [1, 4715] RVT-GII GIIM STKc_PknB_like propeller_TolB propeller_TolB propeller_TolB Feature: gene Location: 1-198 bp Feature: gene Location: 325-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670-1288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670-1288 bp Feature: domain Description: GIIM Note: maturase Location: 1339-1555 bp Feature: domain Description: GIIM Note: maturase Location: 1339-1555 bp Feature: gene Location: 1942-2073 bp Feature: gene Location: 2076-4715 bp Feature: domain Description: STKc_PknB_like Location: 2100-2919 bp Feature: domain Description: STKc_PknB_like Location: 2100-2919 bp Feature: domain Description: propeller_TolB Location: 3294-3555 bp Feature: domain Description: propeller_TolB Location: 3294 -3555 bp Feature: domain Description: propeller_TolB Location: 3738-4020 bp Feature: domain Description: propeller_TolB Location: 3738-4 020 bp Feature: domain Description: propeller_TolB Location: 4065-4671 bp Feature: domain Description: propeller_TolB Location: 4 065-4 671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), STKc_PknB_like (cd14014), propeller_TolB (TIGR02800)

Seq: PLKV01000355.1 Acidobacteriaceae bacterium isolate palsa_420 73.20120800_P2D.6_contig_716, whole genome shotgun sequence (8725 bp)
Overview 1 RT 1: 2817-5535 bp Neighborhood of RT #1 [2817, 5535] RVT-GII GIIM Feature: gene Location: 2817-3014 bp Feature: gene Location: 3194-3532 bp Feature: gene Location: 3676-5001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964-4624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964-4624 bp Feature: domain Description: GIIM Note: maturase Location: 4693-4903 bp Feature: domain Description: GIIM Note: maturase Location: 4693-4903 bp Feature: gene Location: 5020-5247 bp Feature: gene Location: 5269-5535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)