myRT

myRT report for GCA_003140785.1_20120800_P1D

Download annotations/find similar RTs

Seq: PLKY01000098.1 Acidobacteriaceae bacterium isolate palsa_418 73.20120800_P1D.7_contig_13257, whole genome shotgun sequence (5674 bp)
Overview 1 RT 1: 2-4577 bp Neighborhood of RT #1 [2, 4577] COG3581 RVT-GII GIIM RVT-GII Feature: gene Location: 2-343 bp Feature: domain Description: COG3581 Location: 32-239 bp Feature: domain Description: COG3581 Location: 32-239 bp Feature: gene Location: 668-1993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1 61 6 bp Feature: domain Description: GIIM Note: maturase Location: 1685-1895 bp Feature: domain Description: GIIM Note: maturase Location: 1 685-1 895 bp Feature: gene Location: 2037-2255 bp Feature: gene Location: 2526-3815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781-3471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781 -3471 bp Feature: gene Location: 3843-4043 bp Feature: gene Location: 4431-4577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLKY01000332.1 Acidobacteriaceae bacterium isolate palsa_418 73.20120800_P1D.7_contig_21471, whole genome shotgun sequence (6890 bp)
Overview 1 RT 1: 1708-5584 bp Neighborhood of RT #1 [1708, 5691] RVT-GII RimI Feature: gene Location: 1708-1875 bp Feature: gene Location: 2221-2907 bp Feature: gene Location: 2985-4340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3222-3864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 2 -3864 bp Feature: gene Location: 4404-4790 bp Feature: gene Location: 5029-5691 bp Feature: domain Description: RimI Location: 5257-5584 bp Feature: domain Description: RimI Location: 52 57-5584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RimI (COG0456)

Seq: PLKY01000029.1 Acidobacteriaceae bacterium isolate palsa_418 73.20120800_P1D.7_contig_23889, whole genome shotgun sequence (2877 bp)
Overview 1 RT 1: 663-2856 bp Neighborhood of RT #1 [663, 2876] NIPSNAP HTH_ARSR RVT-GII Feature: gene Location: 663-986 bp Feature: domain Description: NIPSNAP Location: 678-966 bp Feature: domain Description: NIPSNAP Location: 678-966 bp Feature: gene Location: 1082-1777 bp Feature: domain Description: HTH_ARSR Location: 1112-1334 bp Feature: domain Description: HTH_ARSR Location: 1112-13 3 4 bp Feature: gene Location: 2331-2876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2547-2856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2547-2856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII, NIPSNAP (pfam07978)

Seq: PLKY01000356.1 Acidobacteriaceae bacterium isolate palsa_418 73.20120800_P1D.7_contig_5582, whole genome shotgun sequence (9720 bp)
Overview 1 RT 1: 2-2998 bp Neighborhood of RT #1 [2, 3009] RVT-Retrons PRK05710 YhaK Feature: gene Location: 2-406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14-134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 -134 bp Feature: gene Location: 1088-2056 bp Feature: domain Description: PRK05710 Location: 1133-1994 bp Feature: domain Description: PRK05710 Location: 1133-1994 bp Feature: gene Location: 2104-3009 bp Feature: domain Description: YhaK Location: 2110-2998 bp Feature: domain Description: YhaK Location: 2110-2998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05710 (tRNA glutamyl-Q(34) synthetase GluQRS), YhaK (COG1741), RVT-Retrons

Seq: PLKY01000077.1 Acidobacteriaceae bacterium isolate palsa_418 73.20120800_P1D.7_contig_5844, whole genome shotgun sequence (3936 bp)
Overview 1 RT 1: 41-2051 bp Neighborhood of RT #1 [41, 2051] RVT-Retrons Feature: gene Location: 41-598 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230-563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230-5 63 bp Feature: gene Location: 923-1153 bp Feature: gene Location: 1557-2051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons