myRT

myRT report for GCA_003142095.1_20120700_S3X

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Seq: PLON01000023.1 Acidimicrobiaceae bacterium isolate bog_800 73.20120700_S3X.67_contig_5883, whole genome shotgun sequence (51577 bp)
Overview 1 RT 1: 691-5968 bp Neighborhood of RT #1 [691, 6033] PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Phage_int_SAM_1 INT_RitC_C_like Phage_int_SAM_1 INT_RitB_C_like Feature: gene Location: 691-1041 bp Feature: gene Location: 1109-3361 bp Feature: domain Description: PinE Location: 1160-1745 bp Feature: domain Description: PinE Location: 1 1 60-1 745 bp Feature: domain Description: Zn_ribbon_recom Location: 2099-2264 bp Feature: domain Description: Zn_ribbon_recom Location: 2099-2264 bp Feature: domain Description: HTH_17 Location: 2954-3065 bp Feature: domain Description: HTH_1 7 Location: 2954-3065 bp Feature: domain Description: HTH_17 Location: 3167-3278 bp Feature: domain Description: HTH_1 7 Location: 31 67-3278 bp Feature: gene Location: 3627-4037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3633-3939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3633-3939 bp Feature: gene Location: 4056-5060 bp Feature: domain Description: Phage_int_SAM_1 Location: 4101-4344 bp Feature: domain Description: Phage_int_SAM_1 Location: 41 01 -4344 bp Feature: domain Description: INT_RitC_C_like Location: 4431-4980 bp Feature: domain Description: INT_RitC_C_like Location: 4431 -4980 bp Feature: gene Location: 5050-6033 bp Feature: domain Description: Phage_int_SAM_1 Location: 5140-5317 bp Feature: domain Description: Phage_int_SAM_1 Location: 51 40-531 7 bp Feature: domain Description: INT_RitB_C_like Location: 5383-5968 bp Feature: domain Description: INT_RitB_C_like Location: 5383-5968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)