myRT

myRT report for GCA_003142355.1_20120800_E3S

Download annotations/find similar RTs

Seq: PLMF01000412.1 Bryobacterales bacterium isolate fen_415 73.20120800_E3S.15_contig_18879, whole genome shotgun sequence (6241 bp)
Overview 1 RT 1: 2-5673 bp Neighborhood of RT #1 [2, 5864] ADOP RVT-GII GIIM integrase_gron integrase_gron Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 2-1300 bp Feature: domain Description: ADOP Location: 8-1301 bp Feature: domain Description: ADOP Location: 8-1 301 bp Feature: gene Location: 1809-3197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154-2772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 54-2772 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3039 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3039 bp Feature: gene Location: 3795-4694 bp Feature: domain Description: integrase_gron Location: 3819-4323 bp Feature: domain Description: integrase_gron Location: 381 9-4323 bp Feature: domain Description: integrase_gron Location: 4410-4650 bp Feature: domain Description: integrase_gron Location: 441 0-4650 bp Feature: gene Location: 4698-5864 bp Feature: domain Description: Zn_Tnp_IS91 Location: 4731-4998 bp Feature: domain Description: Zn_Tnp_IS91 Location: 4731 -4998 bp Feature: domain Description: Y2_Tnp Location: 5118-5673 bp Feature: domain Description: Y2_Tnp Location: 51 1 8-5673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ADOP (TIGR03434), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: PLMF01000415.1 Bryobacterales bacterium isolate fen_415 73.20120800_E3S.15_contig_7065, whole genome shotgun sequence (43691 bp)
Overview 1 RT 1: 40371-43634 bp Neighborhood of RT #1 [40371, 43681] Resolvase Recombinase Zn_ribbon_recom KOG1924 YafY RVT-GII Feature: gene Location: 40371-42626 bp Feature: domain Description: Resolvase Location: 40386-40824 bp Feature: domain Description: Resolvase Location: 40386-4082 4 bp Feature: domain Description: Recombinase Location: 40914-41274 bp Feature: domain Description: Recombinase Location: 40914-412 74 bp Feature: domain Description: Zn_ribbon_recom Location: 41313-41502 bp Feature: domain Description: Zn_ribbon_recom Location: 41313-41502 bp Feature: domain Description: KOG1924 Location: 41598-41997 bp Feature: domain Description: KOG192 4 Location: 41598-41997 bp Feature: gene Location: 42788-43117 bp Feature: domain Description: YafY Location: 42812-42959 bp Feature: domain Description: YafY Location: 42 812 -42 959 bp Feature: gene Location: 42950-43681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43241-43634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432 41-43634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), KOG1924 (KOG1924, RhoA GTPase effector DIA/Diaphanous ), YafY (COG2378), RVT-GII

Seq: PLMF01000186.1 Bryobacterales bacterium isolate fen_415 73.20120800_E3S.15_contig_7839, whole genome shotgun sequence (7224 bp)
Overview 1 RT 1: 41-6979 bp Neighborhood of RT #1 [41, 7050] BACON BACON BACON BACON BACON Soli_cterm RVT-GII PnbA Feature: gene Location: 41-3274 bp Feature: domain Description: BACON Location: 1007-1244 bp Feature: domain Description: BACON Location: 1007-1244 bp Feature: domain Description: BACON Location: 1268-1541 bp Feature: domain Description: BACON Location: 1268-1541 bp Feature: domain Description: BACON Location: 1580-1853 bp Feature: domain Description: BACON Location: 1580-1853 bp Feature: domain Description: BACON Location: 1979-2201 bp Feature: domain Description: BACON Location: 1979-2201 bp Feature: domain Description: BACON Location: 2300-2522 bp Feature: domain Description: BACON Location: 23 00-2522 bp Feature: domain Description: Soli_cterm Location: 2597-3269 bp Feature: domain Description: Soli_cterm Location: 2597-3 269 bp Feature: gene Location: 3597-3860 bp Feature: gene Location: 3928-4362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4216-4300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4216-43 00 bp Feature: gene Location: 4516-5085 bp Feature: gene Location: 5116-7050 bp Feature: domain Description: PnbA Location: 5575-6979 bp Feature: domain Description: PnbA Location: 5575-6979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, BACON (pfam13004), Soli_cterm (TIGR03437), PnbA (COG2272)