myRT

myRT report for GCA_003142635.1_20120800_E2X

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Seq: PLMX01000193.1 Syntrophaceae bacterium isolate fen_1164 73.20120800_E2X.21_contig_103696, whole genome shotgun sequence (3871 bp)
Overview 1 RT 1: 959-3689 bp Neighborhood of RT #1 [959, 3868] thiE PRK04176 RVT-GII GIIM Feature: gene Location: 959-1618 bp Feature: domain Description: thiE Location: 1001-1607 bp Feature: domain Description: thiE Location: 1 001 -1 607 bp Feature: gene Location: 1950-2849 bp Feature: domain Description: PRK04176 Location: 2079-2832 bp Feature: domain Description: PRK041 76 Location: 2079-2832 bp Feature: gene Location: 2846-3868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2852-3422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2852-3422 bp Feature: domain Description: GIIM Note: maturase Location: 3470-3689 bp Feature: domain Description: GIIM Note: maturase Location: 3470-3689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thiE (TIGR00693), PRK04176 (ribulose-1,5-biphosphate synthetase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: PLMX01000026.1 Syntrophaceae bacterium isolate fen_1164 73.20120800_E2X.21_contig_19267, whole genome shotgun sequence (28902 bp)
Overview 1 RT 1: 23630-27482 bp Neighborhood of RT #1 [23630, 27514] RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 23630-23761 bp Feature: gene Location: 23917-24060 bp Feature: gene Location: 24123-25451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24414-25074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4414-2 5074 bp Feature: domain Description: GIIM Note: maturase Location: 25143-25356 bp Feature: domain Description: GIIM Note: maturase Location: 2 5143-2 5356 bp Feature: gene Location: 25575-26576 bp Feature: domain Description: Phage_int_SAM_1 Location: 25623-25869 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 562 3-2 5869 bp Feature: domain Description: INT_RitC_C_like Location: 25956-26493 bp Feature: domain Description: INT_RitC_C_like Location: 2 5956-2 6493 bp Feature: gene Location: 26573-27514 bp Feature: domain Description: INT_RitB_C_like Location: 26882-27482 bp Feature: domain Description: INT_RitB_C_like Location: 2 6882 -2 7482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: PLMX01000063.1 Syntrophaceae bacterium isolate fen_1164 73.20120800_E2X.21_contig_34376, whole genome shotgun sequence (4637 bp)
Overview 1 RT 1: 154-3113 bp Neighborhood of RT #1 [154, 3113] RVT-GII GIIM Feature: gene Location: 154-291 bp Feature: gene Location: 304-528 bp Feature: gene Location: 584-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 869-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 869-1508 bp Feature: domain Description: GIIM Note: maturase Location: 1580-1799 bp Feature: domain Description: GIIM Note: maturase Location: 1580-1799 bp Feature: gene Location: 2200-2394 bp Feature: gene Location: 2895-3113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLMX01000178.1 Syntrophaceae bacterium isolate fen_1164 73.20120800_E2X.21_contig_8374, whole genome shotgun sequence (42015 bp)
Overview 1 RT 1: 5391-14154 bp Neighborhood of RT #1 [5391, 14360] RimI N6_Mtase Eco57I met_A_Alw26 group_II_RT_mat RVT-UNC tcm_partner photo_TT_lyase Feature: gene Location: 5391-6293 bp Feature: domain Description: RimI Location: 5397-5853 bp Feature: domain Description: RimI Location: 5397-5853 bp Feature: gene Location: 6639-10133 bp Feature: domain Description: N6_Mtase Location: 7887-8004 bp Feature: domain Description: N6_Mtase Location: 7887-8004 bp Feature: domain Description: Eco57I Location: 8886-9216 bp Feature: domain Description: Eco57I Location: 8886-9216 bp Feature: domain Description: met_A_Alw26 Location: 9846-10113 bp Feature: domain Description: met_A_Alw26 Location: 984 6-10113 bp Feature: gene Location: 10194-12071 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 10308-10548 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 10308-1054 8 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10632-11109 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10632-11109 bp Feature: gene Location: 12103-13230 bp Feature: domain Description: tcm_partner Location: 12136-12913 bp Feature: domain Description: tcm_partner Location: 12136-12913 bp Feature: gene Location: 13230-14360 bp Feature: domain Description: photo_TT_lyase Location: 13416-14154 bp Feature: domain Description: photo_TT_lyase Location: 134 16-14 154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimI (COG0456), N6_Mtase (pfam02384), Eco57I (pfam07669), met_A_Alw26 (TIGR02987), group_II_RT_mat (TIGR04416), RVT-UG9/RVT-UG19/RVT-UG23(RVT-UNC), tcm_partner (TIGR04474), photo_TT_lyase (TIGR04070)