myRT

myRT report for GCA_003142685.1_20120800_E2D

Download annotations/find similar RTs

Seq: PLNC01000077.1 Acidimicrobiaceae bacterium isolate fen_804 73.20120800_E2D.6_contig_16573, whole genome shotgun sequence (2552 bp)
Overview 1 RT 1: 2-1487 bp Neighborhood of RT #1 [2, 1831] DDE_Tnp_ISAZ013 RVT_N RVT-GII GIIM Feature: gene Location: 2-193 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 107-194 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 1 07-1 94 bp Feature: gene Location: 209-1831 bp Feature: RT Description: RVT_N Location: 248-488 bp Feature: RT Description: RVT_N Location: 248-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-1 202 bp Feature: domain Description: GIIM Note: maturase Location: 1256-1487 bp Feature: domain Description: GIIM Note: maturase Location: 1 256-1 487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISAZ013 (pfam07592)

Seq: PLNC01000068.1 Acidimicrobiaceae bacterium isolate fen_804 73.20120800_E2D.6_contig_37232, whole genome shotgun sequence (4346 bp)
Overview 1 RT 1: 1-3242 bp Neighborhood of RT #1 [1, 3307] KdgK RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 1-492 bp Feature: domain Description: KdgK Location: 31-493 bp Feature: domain Description: KdgK Location: 31-493 bp Feature: gene Location: 527-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-986 bp Feature: gene Location: 1333-2337 bp Feature: domain Description: Phage_int_SAM_1 Location: 1378-1621 bp Feature: domain Description: Phage_int_SAM_1 Location: 1378-162 1 bp Feature: domain Description: INT_RitC_C_like Location: 1708-2257 bp Feature: domain Description: INT_RitC_C_like Location: 1708-2 2 57 bp Feature: gene Location: 2327-3307 bp Feature: domain Description: INT_RitB_C_like Location: 2660-3242 bp Feature: domain Description: INT_RitB_C_like Location: 2 660-32 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), KdgK (cd01166), INT_RitB_C_like (cd00797), RVT-GII

Seq: PLNC01000002.1 Acidimicrobiaceae bacterium isolate fen_804 73.20120800_E2D.6_contig_8646, whole genome shotgun sequence (4717 bp)
Overview 1 RT 1: 1068-4258 bp Neighborhood of RT #1 [1068, 4335] INT_RitB_C_like xerC Phage_int_SAM_1 INT_RitA_C_like RVT-GII Feature: gene Location: 1068-1991 bp Feature: domain Description: INT_RitB_C_like Location: 1386-1962 bp Feature: domain Description: INT_RitB_C_like Location: 13 86-1962 bp Feature: gene Location: 1988-3211 bp Feature: domain Description: xerC Location: 2054-2264 bp Feature: domain Description: xerC Location: 2054-2264 bp Feature: domain Description: Phage_int_SAM_1 Location: 2342-2573 bp Feature: domain Description: Phage_int_SAM_1 Location: 23 42-2573 bp Feature: domain Description: INT_RitA_C_like Location: 2675-3185 bp Feature: domain Description: INT_RitA_C_like Location: 2675-3 185 bp Feature: gene Location: 3265-4335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3580-4258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 580-4258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), xerC (PRK01287), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII