myRT

myRT report for GCA_003142955.1_20120800_E1D

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Seq: PLOH01000001.1 Opitutae bacterium isolate fen_1464 73.20120800_E1D.18_contig_47339, whole genome shotgun sequence (6041 bp)
Overview 1 RT 1: 1523-5005 bp Neighborhood of RT #1 [1523, 5868] Mrr_cat RVT-UG9 Feature: gene Location: 1523-1651 bp Feature: gene Location: 1855-3636 bp Feature: domain Description: Mrr_cat Location: 3211-3559 bp Feature: domain Description: Mrr_cat Location: 321 1 -3559 bp Feature: gene Location: 4186-5868 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 4384-5005 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 4384-5005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), RVT-UG9

Seq: PLOH01000154.1 Opitutae bacterium isolate fen_1464 73.20120800_E1D.18_contig_5067, whole genome shotgun sequence (35835 bp)
Overview 1 RT 1: 1-3089 bp Neighborhood of RT #1 [1, 3142] RVT-GII RVT-GII PRK10529 KdpD Feature: gene Location: 1-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-559 bp Feature: gene Location: 684-1697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1194 bp Feature: gene Location: 1905-2501 bp Feature: domain Description: PRK10529 Location: 1920-2490 bp Feature: domain Description: PRK1052 9 Location: 192 0-2 490 bp Feature: gene Location: 2525-3142 bp Feature: domain Description: KdpD Location: 2531-3089 bp Feature: domain Description: KdpD Location: 2 531-3089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10529 (DNA-binding transcriptional activator KdpE; Provisional), KdpD (pfam02702)

Seq: PLOH01000019.1 Opitutae bacterium isolate fen_1464 73.20120800_E1D.18_contig_69872, whole genome shotgun sequence (3617 bp)
Overview 1 RT 1: 102-3615 bp Neighborhood of RT #1 [102, 3615] RVT-GII GIIM Feature: gene Location: 102-470 bp Feature: gene Location: 1003-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1324-1939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 24-193 9 bp Feature: domain Description: GIIM Note: maturase Location: 1987-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1987-2203 bp Feature: gene Location: 2516-2899 bp Feature: gene Location: 3013-3615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)