myRT

myRT report for GCA_003142995.1_20120700_S3X

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Seq: PLOK01000007.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1463 73.20120700_S3X.9_contig_4994, whole genome shotgun sequence (5073 bp)
Overview 1 RT 1: 134-2314 bp Neighborhood of RT #1 [134, 2314] RVT_N RVT-GII GIIM Feature: gene Location: 134-1642 bp Feature: RT Description: RVT_N Location: 185-428 bp Feature: RT Description: RVT_N Location: 1 85-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1 1 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 1175-1406 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 75-1 406 bp Feature: gene Location: 1688-1936 bp Feature: gene Location: 2030-2314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLOK01000104.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1463 73.20120700_S3X.9_contig_53, whole genome shotgun sequence (23340 bp)
Overview 1 RT 1: 18003-21045 bp Neighborhood of RT #1 [18003, 21045] HTH_XRE RVT_N RVT-GII GIIM Feature: gene Location: 18003-18188 bp Feature: gene Location: 18220-18621 bp Feature: domain Description: HTH_XRE Location: 18445-18607 bp Feature: domain Description: HTH_XRE Location: 18445-18607 bp Feature: gene Location: 18752-20260 bp Feature: RT Description: RVT_N Location: 18803-19046 bp Feature: RT Description: RVT_N Location: 18803-19046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19091-19736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19091-19736 bp Feature: domain Description: GIIM Note: maturase Location: 19796-20024 bp Feature: domain Description: GIIM Note: maturase Location: 19796-2 002 4 bp Feature: gene Location: 20345-20617 bp Feature: gene Location: 20860-21045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLOK01000072.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1463 73.20120700_S3X.9_contig_6308, whole genome shotgun sequence (40363 bp)
Overview 1 RT 1: 3613-6415 bp Neighborhood of RT #1 [3613, 6465] RVT-GII GIIM KdpC Feature: gene Location: 3613-3867 bp Feature: gene Location: 3907-4038 bp Feature: gene Location: 4305-5189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4311-4665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 11-4665 bp Feature: domain Description: GIIM Note: maturase Location: 4725-4953 bp Feature: domain Description: GIIM Note: maturase Location: 4725-4953 bp Feature: gene Location: 5225-5395 bp Feature: gene Location: 5842-6465 bp Feature: domain Description: KdpC Location: 5860-6415 bp Feature: domain Description: KdpC Location: 5860-6415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KdpC (pfam02669)