myRT

myRT report for GCA_003143655.1_ASM314365v1

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Seq: QEMT01000141.1 Escherichia coli strain B8S56 NODE_141_length_3095_cov_123.98, whole genome shotgun sequence (3095 bp)
Overview 1 RT 1: 2-2914 bp Neighborhood of RT #1 [2, 2922] Tra5 RVT-GII GIIM Tra5 Feature: gene Location: 2-265 bp Feature: domain Description: Tra5 Location: 32-200 bp Feature: domain Description: Tra5 Location: 32-200 bp Feature: gene Location: 857-2098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1130-1862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 30-1 862 bp Feature: domain Description: GIIM Note: maturase Location: 1937-2093 bp Feature: domain Description: GIIM Note: maturase Location: 1 937-2093 bp Feature: gene Location: 2150-2380 bp Feature: gene Location: 2491-2922 bp Feature: domain Description: Tra5 Location: 2497-2914 bp Feature: domain Description: Tra5 Location: 2497-291 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: QEMT01000052.1 Escherichia coli strain B8S56 NODE_52_length_31101_cov_117.537, whole genome shotgun sequence (31101 bp)
Overview 1 RT 1: 1712-5686 bp Neighborhood of RT #1 [1712, 5712] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 1712-2743 bp Feature: domain Description: Asparaginase_2 Location: 1802-2735 bp Feature: domain Description: Asparaginase_2 Location: 1802 -2 735 bp Feature: gene Location: 3062-3211 bp Feature: gene Location: 3259-3705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3565-3667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3565-3667 bp Feature: gene Location: 3927-4298 bp Feature: gene Location: 4351-5712 bp Feature: domain Description: DcuC Location: 4354-5686 bp Feature: domain Description: DcuC Location: 4354-5686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: QEMT01000073.1 Escherichia coli strain B8S56 NODE_73_length_21278_cov_130.159, whole genome shotgun sequence (21278 bp)
Overview 1 RT 1: 1-2195 bp Neighborhood of RT #1 [1, 2195] RVT-GII Feature: gene Location: 1-204 bp Feature: gene Location: 530-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644-13 3 1 bp Feature: gene Location: 1680-1988 bp Feature: gene Location: 2022-2195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QEMT01000079.1 Escherichia coli strain B8S56 NODE_79_length_16460_cov_150.193, whole genome shotgun sequence (16460 bp)
Overview 1 RT 1: 2866-8897 bp Neighborhood of RT #1 [2866, 8897] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 2866-3786 bp Feature: domain Description: AbiEii Location: 2908-3649 bp Feature: domain Description: AbiEii Location: 2908-364 9 bp Feature: gene Location: 3773-4576 bp Feature: domain Description: AbiEi_3_N Location: 3806-4067 bp Feature: domain Description: AbiEi_3_N Location: 3806-4 067 bp Feature: domain Description: AbiEi_3 Location: 4079-4535 bp Feature: domain Description: AbiEi_3 Location: 4 079-4 535 bp Feature: gene Location: 4871-8080 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5399-5888 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5399-5888 bp Feature: domain Description: nitrilase Location: 7394-7991 bp Feature: domain Description: nitrilase Location: 7394 -7991 bp Feature: gene Location: 8241-8381 bp Feature: domain Description: Phage_ASH Location: 8268-8361 bp Feature: domain Description: Phage_ASH Location: 8268-8361 bp Feature: gene Location: 8427-8897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)