myRT

myRT report for GCA_003143695.2_ASM314369v2

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Seq: QEMY02000001.1 Streptococcus halitosis strain VT-4 NODE_1_length_1331771_cov_478.225, whole genome shotgun sequence (1331771 bp)
Overview 1 RT 1: 596870-602515 bp Neighborhood of RT #1 [596870, 602532] GT2_AmsE_like MFS_NIMT_CynX_like RVT-Retrons RVT-Retrons PadR COG4709 Feature: gene Location: 596870-597700 bp Feature: domain Description: GT2_AmsE_like Location: 596894-597500 bp Feature: domain Description: GT2_AmsE_like Location: 596894-597500 bp Feature: gene Location: 597922-599088 bp Feature: domain Description: MFS_NIMT_CynX_like Location: 597949-599071 bp Feature: domain Description: MFS_NIMT_CynX_like Location: 597949-599071 bp Feature: gene Location: 599386-599634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 599515-599608 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59951 5-599608 bp Feature: gene Location: 599710-601437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 599713-600148 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59971 3-6001 48 bp Feature: gene Location: 601626-601952 bp Feature: domain Description: PadR Location: 601650-601917 bp Feature: domain Description: PadR Location: 601 650-601 91 7 bp Feature: gene Location: 601939-602532 bp Feature: domain Description: COG4709 Location: 601942-602515 bp Feature: domain Description: COG4709 Location: 601 942-60251 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT2_AmsE_like (cd04195), MFS_NIMT_CynX_like (cd17339), RVT-Retrons, PadR (pfam03551), COG4709 (Uncharacterized membrane protein )

Seq: QEMY02000003.1 Streptococcus halitosis strain VT-4 NODE_3_length_145432_cov_385.664, whole genome shotgun sequence (145432 bp)
Overview 1 RT 1: 21598-27245 bp Neighborhood of RT #1 [21598, 27265] HTH_XRE RVT-GII Uup CcmA ABCF_EF-3 MdlB Feature: gene Location: 21598-21777 bp Feature: gene Location: 21861-22082 bp Feature: domain Description: HTH_XRE Location: 21870-22038 bp Feature: domain Description: HTH_XRE Location: 2 1870-2 2 038 bp Feature: gene Location: 23286-23591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23490-23586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3490-2 3586 bp Feature: gene Location: 24069-25469 bp Feature: domain Description: Uup Location: 24072-24294 bp Feature: domain Description: Uup Location: 2 4072 -2 42 94 bp Feature: domain Description: CcmA Location: 24294-24783 bp Feature: domain Description: CcmA Location: 2 42 94-2 4783 bp Feature: domain Description: ABCF_EF-3 Location: 24942-25407 bp Feature: domain Description: ABCF_EF-3 Location: 2 4942 -2 5407 bp Feature: gene Location: 25490-27265 bp Feature: domain Description: MdlB Location: 25532-27245 bp Feature: domain Description: MdlB Location: 2 5532 -2 72 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, Uup (COG0488), CcmA (COG4133), ABCF_EF-3 (cd03221), MdlB (COG1132)