myRT

myRT report for GCA_003143795.1_ASM314379v1

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Seq: QFRL01000014.1 Pseudomonas aeruginosa strain PAL0.1, whole genome shotgun sequence (188410 bp)
Overview 1 RT 1: 98316-103902 bp Neighborhood of RT #1 [98316, 103902] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 98316-99152 bp Feature: domain Description: HDOD Location: 98319-99147 bp Feature: domain Description: HDOD Location: 9831 9-991 47 bp Feature: gene Location: 99253-100197 bp Feature: domain Description: YgfZ Location: 99262-100162 bp Feature: domain Description: YgfZ Location: 99262-1 001 62 bp Feature: gene Location: 101920-103239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101923-102499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 923-1 02499 bp Feature: domain Description: YkfC Location: 102697-102853 bp Feature: domain Description: YkfC Location: 1 02697-1 02853 bp Feature: domain Description: HNH Note: nucleases Location: 103036-103174 bp Feature: domain Description: HNH Note: nucleases Location: 1 03036-1 031 74 bp Feature: gene Location: 103315-103569 bp Feature: domain Description: SdhE Location: 103321-103561 bp Feature: domain Description: SdhE Location: 1 03321 -1 03561 bp Feature: gene Location: 103708-103902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: QFRL01000002.1 Pseudomonas aeruginosa strain PAL0.1, whole genome shotgun sequence (377153 bp)
Overview 1 RT 1: 292049-302782 bp 2 RT 2: 319040-327860 bp Neighborhood of RT #1 [292049, 302784] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319040, 327889] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292049-292264 bp Feature: domain Description: NERD Location: 292076-292199 bp Feature: domain Description: NERD Location: 2 92 076-2 92 199 bp Feature: gene Location: 292477-293598 bp Feature: domain Description: COG3177 Location: 292495-293587 bp Feature: domain Description: COG3177 Location: 2 92 495-2 93587 bp Feature: gene Location: 294321-296006 bp Feature: domain Description: RVT_N Location: 294378-294618 bp Feature: domain Description: RVT_N Location: 2 94378-2 94618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294666-295302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94666-2 95302 bp Feature: domain Description: GIIM Note: maturase Location: 295356-295587 bp Feature: domain Description: GIIM Note: maturase Location: 2 95356-2 95587 bp Feature: domain Description: HNH Note: nucleases Location: 295839-295977 bp Feature: domain Description: HNH Note: nucleases Location: 2 95839-2 95977 bp Feature: gene Location: 297087-300824 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297195-297852 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 97195-2 97852 bp Feature: domain Description: PRK09776 Location: 298065-298536 bp Feature: domain Description: PRK09776 Location: 2 98065-2 98536 bp Feature: domain Description: PAS Location: 298593-299118 bp Feature: domain Description: PAS Location: 2 98593-2 99118 bp Feature: domain Description: PRK10060 Location: 299130-300774 bp Feature: domain Description: PRK10060 Location: 2 99130-300774 bp Feature: gene Location: 300931-302784 bp Feature: domain Description: PRK05658 Location: 300943-302782 bp Feature: domain Description: PRK05658 Location: 300943-302 782 bp Feature: gene Location: 319040-320254 bp Feature: domain Description: PRK10770 Location: 319052-320246 bp Feature: domain Description: PRK10770 Location: 319052 -32 02 46 bp Feature: gene Location: 320313-323084 bp Feature: domain Description: LptD Location: 320508-323070 bp Feature: domain Description: LptD Location: 32 0508-32 3070 bp Feature: gene Location: 323217-324929 bp Feature: domain Description: RVT_N Location: 323274-323517 bp Feature: domain Description: RVT_N Location: 32 32 74-32 3517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323562-324198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 3562 -32 4198 bp Feature: domain Description: YkfC Location: 324408-324558 bp Feature: domain Description: YkfC Location: 32 4408-32 4558 bp Feature: domain Description: HNH Note: nucleases Location: 324735-324873 bp Feature: domain Description: HNH Note: nucleases Location: 32 4735-32 4873 bp Feature: gene Location: 326202-327218 bp Feature: domain Description: COG3178 Location: 326205-327204 bp Feature: domain Description: COG3178 Location: 32 62 05-32 72 04 bp Feature: gene Location: 327215-327889 bp Feature: domain Description: NTP_transferase_like_1 Location: 327221-327860 bp Feature: domain Description: NTP_transferase_like_1 Location: 32 72 2 1-32 7860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: QFRL01000044.1 Pseudomonas aeruginosa strain PAL0.1, whole genome shotgun sequence (37800 bp)
Overview 1 RT 1: 32270-37737 bp Neighborhood of RT #1 [32270, 37737] CHD CHD RVT-GII GIIM Feature: gene Location: 32270-33814 bp Feature: domain Description: CHD Location: 32486-32900 bp Feature: domain Description: CHD Location: 3 2486-3 2900 bp Feature: domain Description: CHD Location: 33128-33617 bp Feature: domain Description: CHD Location: 3 3 128-3 3 617 bp Feature: gene Location: 34898-35077 bp Feature: gene Location: 35809-37077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36022-36679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6022-3 6679 bp Feature: domain Description: GIIM Note: maturase Location: 36757-36979 bp Feature: domain Description: GIIM Note: maturase Location: 3 6757-3 6979 bp Feature: gene Location: 37570-37737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: QFRL01000055.1 Pseudomonas aeruginosa strain PAL0.1, whole genome shotgun sequence (15375 bp)
Overview 1 RT 1: 5262-13434 bp Neighborhood of RT #1 [5262, 13628] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 5262-7133 bp Feature: domain Description: DUF262 Location: 5310-6078 bp Feature: domain Description: DUF262 Location: 5310-6078 bp Feature: gene Location: 7137-8918 bp Feature: domain Description: YeeA Location: 8004-8784 bp Feature: domain Description: YeeA Location: 8004 -8784 bp Feature: gene Location: 8915-11935 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9410-9881 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94 10-9881 bp Feature: gene Location: 11932-12489 bp Feature: gene Location: 12489-13628 bp Feature: domain Description: AAA_21 Location: 12561-12630 bp Feature: domain Description: AAA_21 Location: 12561-12630 bp Feature: domain Description: AAA_21 Location: 13104-13434 bp Feature: domain Description: AAA_21 Location: 13104 -134 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)