myRT

myRT report for GCA_003144955.1_ASM314495v1

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Seq: NBCC01000034.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont034, whole genome shotgun sequence (8497 bp)
Overview 1 RT 1: 4838-8495 bp Neighborhood of RT #1 [4838, 8495] YccC PRK10016 RVT-GII Feature: gene Location: 4838-5896 bp Feature: domain Description: YccC Location: 4844-5882 bp Feature: domain Description: YccC Location: 4844-5882 bp Feature: gene Location: 6095-6568 bp Feature: domain Description: PRK10016 Location: 6098-6563 bp Feature: domain Description: PRK1 001 6 Location: 6098-6563 bp Feature: gene Location: 6642-8129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7047-7737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7047-7737 bp Feature: gene Location: 8154-8495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII

Seq: NBCC01000078.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont078, whole genome shotgun sequence (2897 bp)
Overview 1 RT 1: 2-2763 bp Neighborhood of RT #1 [2, 2879] RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 2-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-743 bp Feature: domain Description: GIIM Note: maturase Location: 818-1016 bp Feature: domain Description: GIIM Note: maturase Location: 818-1016 bp Feature: gene Location: 1426-1584 bp Feature: domain Description: PHA02517 Location: 1429-1549 bp Feature: domain Description: PHA02 517 Location: 142 9-1549 bp Feature: gene Location: 1803-2879 bp Feature: domain Description: COG3547 Location: 1842-2763 bp Feature: domain Description: COG3547 Location: 1842 -2 763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: NBCC01000079.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont079, whole genome shotgun sequence (2569 bp)
Overview 1 RT 1: 2-2110 bp Neighborhood of RT #1 [2, 2184] RVT-GII GIIM PHA02517 Acetyltransf_7 Feature: gene Location: 2-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-743 bp Feature: domain Description: GIIM Note: maturase Location: 818-1016 bp Feature: domain Description: GIIM Note: maturase Location: 818-1016 bp Feature: gene Location: 1438-1818 bp Feature: domain Description: PHA02517 Location: 1441-1810 bp Feature: domain Description: PHA02517 Location: 1441-1810 bp Feature: gene Location: 1930-2184 bp Feature: domain Description: Acetyltransf_7 Location: 1957-2110 bp Feature: domain Description: Acetyltransf_7 Location: 1957-2110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), Acetyltransf_7 (pfam13508), RVT-GII, GIIM (pfam08388)

Seq: NBCC01000080.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont080, whole genome shotgun sequence (3604 bp)
Overview 1 RT 1: 2-2975 bp Neighborhood of RT #1 [2, 3160] RVT-GII GIIM PHA02517 Rep_3 Feature: gene Location: 2-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-74 3 bp Feature: domain Description: GIIM Note: maturase Location: 818-1016 bp Feature: domain Description: GIIM Note: maturase Location: 818-1016 bp Feature: gene Location: 1378-1824 bp Feature: domain Description: PHA02517 Location: 1381-1822 bp Feature: domain Description: PHA02517 Location: 1381-1822 bp Feature: gene Location: 2150-3160 bp Feature: domain Description: Rep_3 Location: 2222-2975 bp Feature: domain Description: Rep_3 Location: 2222-2975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rep_3 (pfam01051)

Seq: NBCC01000093.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont093, whole genome shotgun sequence (3763 bp)
Overview 1 RT 1: 1328-3313 bp Neighborhood of RT #1 [1328, 3705] PRK10276 RVT-GII Feature: gene Location: 1328-1690 bp Feature: domain Description: PRK10276 Location: 1334-1664 bp Feature: domain Description: PRK10276 Location: 1334-1664 bp Feature: gene Location: 2009-2221 bp Feature: gene Location: 2296-3705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623-3313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623-3313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NBCC01000109.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont109, whole genome shotgun sequence (2917 bp)
Overview 1 RT 1: 735-2671 bp Neighborhood of RT #1 [735, 2916] PinE PHA02517 RVT-GII GIIM Feature: gene Location: 735-1049 bp Feature: domain Description: PinE Location: 741-1035 bp Feature: domain Description: PinE Location: 741-1035 bp Feature: gene Location: 1094-1540 bp Feature: domain Description: PHA02517 Location: 1097-1538 bp Feature: domain Description: PHA02517 Location: 1097-1538 bp Feature: gene Location: 1657-2916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1666-2398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 6 6 -2398 bp Feature: domain Description: GIIM Note: maturase Location: 2473-2671 bp Feature: domain Description: GIIM Note: maturase Location: 2473-26 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: NBCC01000115.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont115, whole genome shotgun sequence (13267 bp)
Overview 1 RT 1: 3-3250 bp Neighborhood of RT #1 [3, 3348] RVT-GII HupE_UreJ_2 Feature: gene Location: 3-215 bp Feature: gene Location: 369-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 4-1464 bp Feature: gene Location: 2247-2567 bp Feature: gene Location: 2611-3348 bp Feature: domain Description: HupE_UreJ_2 Location: 2797-3250 bp Feature: domain Description: HupE_UreJ_2 Location: 27 97 -3250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HupE_UreJ_2 (pfam13795), RVT-GII

Seq: NBCC01000116.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont116, whole genome shotgun sequence (13978 bp)
Overview 1 RT 1: 3-2582 bp Neighborhood of RT #1 [3, 2584] RVT-GII PRK10276 umuC Feature: gene Location: 3-215 bp Feature: gene Location: 369-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: gene Location: 1935-2354 bp Feature: domain Description: PRK10276 Location: 1938-2352 bp Feature: domain Description: PRK10276 Location: 1938 -2352 bp Feature: gene Location: 2354-2584 bp Feature: domain Description: umuC Location: 2357-2582 bp Feature: domain Description: umuC Location: 2357-258 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), RVT-GII

Seq: NBCC01000117.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont117, whole genome shotgun sequence (18676 bp)
Overview 1 RT 1: 3-4116 bp Neighborhood of RT #1 [3, 4118] RVT-GII PRK08155 Feature: gene Location: 3-344 bp Feature: gene Location: 369-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: gene Location: 1949-2392 bp Feature: gene Location: 2430-4118 bp Feature: domain Description: PRK08155 Location: 2433-4116 bp Feature: domain Description: PRK08155 Location: 2433-4116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08155 (acetolactate synthase large subunit), RVT-GII

Seq: NBCC01000118.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont118, whole genome shotgun sequence (92918 bp)
Overview 1 RT 1: 59-3551 bp Neighborhood of RT #1 [59, 4435] RVT-GII Phage_GPA Feature: gene Location: 59-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: gene Location: 1571-1933 bp Feature: gene Location: 2021-4435 bp Feature: domain Description: Phage_GPA Location: 2585-3551 bp Feature: domain Description: Phage_GPA Location: 2585-3551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII

Seq: NBCC01000119.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont119, whole genome shotgun sequence (8675 bp)
Overview 1 RT 1: 59-2760 bp Neighborhood of RT #1 [59, 2774] RVT-GII hlyE Feature: gene Location: 59-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-11 54 bp Feature: gene Location: 1571-1957 bp Feature: gene Location: 2118-2774 bp Feature: domain Description: hlyE Location: 2265-2760 bp Feature: domain Description: hlyE Location: 2265-2760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hlyE (PRK11376), RVT-GII

Seq: NBCC01000170.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont170, whole genome shotgun sequence (17934 bp)
Overview 1 RT 1: 15546-17932 bp Neighborhood of RT #1 [15546, 17932] DinI RVT-GII Feature: gene Location: 15546-15779 bp Feature: domain Description: DinI Location: 15588-15774 bp Feature: domain Description: DinI Location: 15588-15774 bp Feature: gene Location: 15790-15978 bp Feature: gene Location: 16079-17566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16484-17174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16484-17174 bp Feature: gene Location: 17591-17932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII

Seq: NBCC01000174.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont174, whole genome shotgun sequence (5090 bp)
Overview 1 RT 1: 870-4640 bp Neighborhood of RT #1 [870, 5032] AslB AslB emrD RVT-GII Feature: gene Location: 870-1367 bp Feature: domain Description: AslB Location: 876-1173 bp Feature: domain Description: AslB Location: 876-1173 bp Feature: domain Description: AslB Location: 1185-1353 bp Feature: domain Description: AslB Location: 1185-13 53 bp Feature: gene Location: 1375-2559 bp Feature: domain Description: emrD Location: 1378-2554 bp Feature: domain Description: emrD Location: 13 78-2554 bp Feature: gene Location: 3545-5032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3950-4640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3950-4640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT emrD (PRK11652), RVT-GII, AslB (COG0641)

Seq: NBCC01000185.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont185, whole genome shotgun sequence (24915 bp)
Overview 1 RT 1: 21731-24465 bp Neighborhood of RT #1 [21731, 24857] dacD RVT-GII Feature: gene Location: 21731-22903 bp Feature: domain Description: dacD Location: 21740-22901 bp Feature: domain Description: dacD Location: 21740-22901 bp Feature: gene Location: 23161-23373 bp Feature: gene Location: 23448-24857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23775-24465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23775-24465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dacD (PRK11397), RVT-GII

Seq: NBCC01000189.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont189, whole genome shotgun sequence (2226 bp)
Overview 1 RT 1: 2-1890 bp Neighborhood of RT #1 [2, 2135] YkfC RVT-GII GIIM Feature: gene Location: 2-319 bp Feature: gene Location: 613-960 bp Feature: domain Description: YkfC Location: 622-883 bp Feature: domain Description: YkfC Location: 622-883 bp Feature: gene Location: 927-2135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1692-1890 bp Feature: domain Description: GIIM Note: maturase Location: 1692-1890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: NBCC01000190.1 Escherichia coli strain Win2012_WWKa_OUT_29 Cont190, whole genome shotgun sequence (2227 bp)
Overview 1 RT 1: 2-1891 bp Neighborhood of RT #1 [2, 2136] RVT-GII GIIM Feature: gene Location: 2-319 bp Feature: gene Location: 613-2136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-16 18 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1891 bp Feature: domain Description: GIIM Note: maturase Location: 16 93-1891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)