myRT

myRT report for GCA_003144995.1_ASM314499v1

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Seq: NBCE01000096.1 Escherichia coli strain Win2012_WWKa_OUT_33 Cont096, whole genome shotgun sequence (171196 bp)
Overview 1 RT 1: 36645-40527 bp Neighborhood of RT #1 [36645, 40532] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 36645-37103 bp Feature: domain Description: dut Location: 36651-37098 bp Feature: domain Description: dut Location: 36651 -37098 bp Feature: gene Location: 37210-37806 bp Feature: domain Description: slmA Location: 37216-37792 bp Feature: domain Description: slmA Location: 3721 6-37792 bp Feature: gene Location: 37852-38811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37987-38536 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37987-38536 bp Feature: gene Location: 39109-39765 bp Feature: domain Description: pyrE Location: 39127-39760 bp Feature: domain Description: pyrE Location: 391 27-39760 bp Feature: gene Location: 39816-40532 bp Feature: domain Description: rph Location: 39819-40527 bp Feature: domain Description: rph Location: 3981 9-40527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NBCE01000132.1 Escherichia coli strain Win2012_WWKa_OUT_33 Cont132, whole genome shotgun sequence (17042 bp)
Overview 1 RT 1: 4366-8260 bp Neighborhood of RT #1 [4366, 8260] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 4366-5397 bp Feature: domain Description: LacI Location: 4408-4543 bp Feature: domain Description: LacI Location: 4408-4543 bp Feature: domain Description: PBP1_GntR Location: 4582-5392 bp Feature: domain Description: PBP1_GntR Location: 4582 -5392 bp Feature: gene Location: 5431-5616 bp Feature: gene Location: 5924-6775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5927-6335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 7-6335 bp Feature: domain Description: GIIM Note: maturase Location: 6383-6605 bp Feature: domain Description: GIIM Note: maturase Location: 6383-6605 bp Feature: gene Location: 6748-7182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6940-7156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6940-7156 bp Feature: gene Location: 7351-7548 bp Feature: gene Location: 7907-8260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)